Variant report

Variant	rs35083199
Chromosome Location	chr17:60140460-60140461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:60080434..60082668-chr17:60139795..60141369,2	MCF-7	breast:
2	chr17:59488326..59489898-chr17:60140011..60142459,2	MCF-7	breast:
3	chr17:59938249..59942766-chr17:60140265..60145745,10	MCF-7	breast:
4	chr17:60109100..60115940-chr17:60139087..60144589,10	MCF-7	breast:
5	chr17:60080572..60082564-chr17:60139030..60141974,2	K562	blood:

Variant related genes	Relation type
ENSG00000200842	Chromatin interaction
ENSG00000108510	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000267280	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34144792	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60108000-60141400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:60109000-60141200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:60111400-60141400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr17:60126200-60141600	Weak transcription	Esophagus	oesophagus
5	chr17:60134200-60141000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr17:60134600-60140800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
7	chr17:60137000-60140800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:60138000-60141000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr17:60138200-60140800	Transcr. at gene 5' and 3'	Dnd41	blood
10	chr17:60138400-60141600	Weak transcription	Lung	lung
11	chr17:60138400-60142000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr17:60138600-60141000	Weak transcription	Placenta	Placenta
13	chr17:60138800-60140600	Transcr. at gene 5' and 3'	K562	blood
14	chr17:60138800-60141600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr17:60139000-60140800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr17:60139000-60141000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr17:60139000-60141200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr17:60139000-60141600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr17:60139200-60140600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
20	chr17:60139200-60140600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
21	chr17:60139200-60140800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr17:60139200-60140800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr17:60139200-60141200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:60139200-60141400	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr17:60139200-60141800	Flanking Active TSS	HUVEC	blood vessel
26	chr17:60139200-60142000	Flanking Active TSS	Liver	Liver
27	chr17:60139400-60140600	Flanking Active TSS	NH-A	brain
28	chr17:60139400-60141400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr17:60139400-60141800	Transcr. at gene 5' and 3'	A549	lung
30	chr17:60139400-60143400	Active TSS	GM12878-XiMat	blood
31	chr17:60139600-60140600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
32	chr17:60139600-60140600	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
33	chr17:60139600-60140600	Transcr. at gene 5' and 3'	HepG2	liver
34	chr17:60139600-60140600	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
35	chr17:60139600-60140800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr17:60139600-60140800	Enhancers	Stomach Mucosa	stomach
37	chr17:60139600-60140800	Flanking Active TSS	NHEK	skin
38	chr17:60139600-60142200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr17:60139800-60140600	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
40	chr17:60139800-60140600	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
41	chr17:60139800-60140600	Transcr. at gene 5' and 3'	Hela-S3	cervix
42	chr17:60139800-60140800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr17:60139800-60140800	Genic enhancers	Primary monocytes fromperipheralblood	blood
44	chr17:60139800-60140800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr17:60139800-60140800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr17:60139800-60140800	Flanking Active TSS	Fetal Brain Male	brain
47	chr17:60139800-60141000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
48	chr17:60139800-60141200	Enhancers	Primary B cells from peripheral blood	blood
49	chr17:60139800-60141400	Flanking Active TSS	Osteobl	bone
50	chr17:60139800-60141600	Flanking Active TSS	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links