Variant report

Variant	rs35090621
Chromosome Location	chr1:222030561-222030562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:222024775..222027186-chr1:222029281..222032631,4	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10863664	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11118874	0.85[EUR][1000 genomes]
rs11118875	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11579490	0.84[AMR][1000 genomes]
rs12118052	0.83[EUR][1000 genomes]
rs12130910	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4308986	0.94[EUR][1000 genomes]
rs4384245	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4528124	0.94[EUR][1000 genomes]
rs6604675	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6604676	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6604677	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6604678	0.84[AMR][1000 genomes]
rs6658977	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6659311	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6691170	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6699132	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7544478	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7550628	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7556214	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7556228	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469786	chr1:221855871-222040335	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482867	chr1:221855871-222040335	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222019800-222031800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:222019800-222047600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:222020600-222031600	Weak transcription	HMEC	breast
4	chr1:222025400-222031800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:222025400-222031800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:222028600-222031800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:222029400-222032000	Weak transcription	NHLF	lung
8	chr1:222030000-222031400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:222030200-222031400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:222030200-222031800	Weak transcription	NHEK	skin
11	chr1:222030200-222032000	Weak transcription	NHDF-Ad	bronchial

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