Variant report

Variant	rs35091752
Chromosome Location	chr8:131400147-131400148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28396295	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28587625	0.99[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2912191	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35427556	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3924865	0.91[EUR][1000 genomes]
rs6980501	0.87[EUR][1000 genomes]
rs6995074	0.99[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7386870	0.87[EUR][1000 genomes]
rs7839214	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv982153	chr8:131391067-131407495	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131371600-131419800	Weak transcription	Aorta	Aorta
2	chr8:131374600-131409000	Weak transcription	Fetal Brain Female	brain
3	chr8:131381000-131401400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:131383800-131409200	Weak transcription	Right Atrium	heart
5	chr8:131384000-131400800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:131384800-131408200	Weak transcription	Adipose Nuclei	Adipose
7	chr8:131384800-131408800	Weak transcription	Brain Germinal Matrix	brain
8	chr8:131385800-131408600	Weak transcription	Fetal Brain Male	brain
9	chr8:131388600-131400200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:131388600-131407200	Weak transcription	HSMM	muscle
11	chr8:131388800-131400400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:131388800-131400600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:131388800-131400800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:131388800-131408400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:131389400-131409200	Weak transcription	Pancreas	Pancrea
16	chr8:131390000-131400400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:131390400-131400200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr8:131390400-131401000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:131390400-131407200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:131390800-131401200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:131390800-131401400	Weak transcription	Liver	Liver
22	chr8:131390800-131407000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr8:131392200-131400200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:131392400-131407600	Weak transcription	HSMMtube	muscle
25	chr8:131393000-131400400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:131393000-131401000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr8:131394200-131408800	Weak transcription	NH-A	brain
28	chr8:131395600-131400400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:131395600-131434200	Weak transcription	Hela-S3	cervix
30	chr8:131396200-131408600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:131396800-131400200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:131396800-131400600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr8:131396800-131408400	Weak transcription	Fetal Heart	heart
34	chr8:131397200-131407400	Weak transcription	Spleen	Spleen
35	chr8:131397400-131407200	Weak transcription	Ovary	ovary
36	chr8:131398200-131400800	Weak transcription	NHDF-Ad	bronchial
37	chr8:131398200-131408400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr8:131398200-131413600	Weak transcription	Fetal Intestine Small	intestine
39	chr8:131398600-131400200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr8:131398600-131400400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr8:131398600-131400400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr8:131398600-131408200	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr8:131398800-131400800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr8:131398800-131408800	Weak transcription	Right Ventricle	heart
45	chr8:131398800-131417000	Weak transcription	Esophagus	oesophagus
46	chr8:131399000-131400600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr8:131399000-131401000	Weak transcription	Osteobl	bone
48	chr8:131399000-131404800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr8:131399000-131407000	Weak transcription	Fetal Muscle Leg	muscle
50	chr8:131399200-131400200	Weak transcription	H1 Cell Line	embryonic stem cell

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