Variant report

Variant	rs35091825
Chromosome Location	chr17:46109428-46109429
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46107614..46109746-chr17:46202771..46206014,3	K562	blood:
2	chr17:46109109..46109883-chr17:46208236..46209220,2	MCF-7	breast:
3	chr17:46108859..46110468-chr17:46197931..46199848,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10491182	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10491183	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1051001	0.96[EUR][1000 genomes]
rs11079805	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11651275	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11656818	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12452399	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28405789	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41429650	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7209072	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7210041	0.98[EUR][1000 genomes]
rs9890096	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9895554	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9900074	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9903963	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9914123	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469808	chr17:46049868-46228673	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv482897	chr17:46049868-46228673	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35091825	PNPO	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46103600-46110600	Weak transcription	Aorta	Aorta
2	chr17:46104200-46113800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr17:46104400-46109600	Weak transcription	Ovary	ovary
4	chr17:46104400-46110600	Weak transcription	Spleen	Spleen
5	chr17:46104400-46111000	Weak transcription	Lung	lung
6	chr17:46104400-46114000	Weak transcription	Liver	Liver
7	chr17:46104400-46114000	Weak transcription	Right Ventricle	heart
8	chr17:46104400-46114200	Weak transcription	Brain Substantia Nigra	brain
9	chr17:46104600-46113800	Weak transcription	HSMM	muscle
10	chr17:46104600-46114000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr17:46104600-46114000	Weak transcription	Brain Hippocampus Middle	brain
12	chr17:46104800-46111000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr17:46104800-46113800	Weak transcription	NHDF-Ad	bronchial
14	chr17:46104800-46114000	Weak transcription	HSMMtube	muscle
15	chr17:46105000-46113800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr17:46105400-46114000	Weak transcription	K562	blood
17	chr17:46105600-46114000	Weak transcription	Pancreas	Pancrea
18	chr17:46108200-46110800	Weak transcription	Placenta	Placenta
19	chr17:46108200-46113200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr17:46108400-46111600	Strong transcription	Fetal Muscle Leg	muscle
21	chr17:46108400-46113800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr17:46108400-46114000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr17:46108400-46114000	Weak transcription	Adipose Nuclei	Adipose
24	chr17:46108400-46114000	Weak transcription	NH-A	brain
25	chr17:46108400-46114200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr17:46108400-46114200	Weak transcription	Brain Anterior Caudate	brain
27	chr17:46108400-46114200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr17:46108400-46114200	Weak transcription	Esophagus	oesophagus
29	chr17:46108600-46109600	Weak transcription	Osteobl	bone
30	chr17:46108600-46113800	Weak transcription	Colon Smooth Muscle	Colon
31	chr17:46109000-46109600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr17:46109000-46111200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr17:46109000-46111200	Strong transcription	Fetal Stomach	stomach
34	chr17:46109000-46111400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr17:46109000-46111400	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr17:46109000-46111800	Strong transcription	Fetal Muscle Trunk	muscle
37	chr17:46109000-46112600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr17:46109200-46109600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr17:46109200-46111200	Strong transcription	Stomach Smooth Muscle	stomach
40	chr17:46109200-46111400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr17:46109200-46112600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr17:46109400-46109600	Enhancers	Hela-S3	cervix
43	chr17:46109400-46109800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr17:46109400-46110400	Strong transcription	Placenta Amnion	Placenta Amnion
45	chr17:46109400-46111400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr17:46109400-46111400	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr17:46109400-46111400	Strong transcription	NHLF	lung

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