Variant report

Variant	rs35093130
Chromosome Location	chr15:44255155-44255156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2059625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2555377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2733218	1.00[AMR][1000 genomes]
rs2733225	1.00[EUR][1000 genomes]
rs28537381	1.00[EUR][1000 genomes]
rs2899104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2929276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2930527	1.00[EUR][1000 genomes]
rs2930532	1.00[EUR][1000 genomes]
rs2930534	1.00[EUR][1000 genomes]
rs475758	1.00[EUR][1000 genomes]
rs482124	1.00[EUR][1000 genomes]
rs483165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4924721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs494774	1.00[EUR][1000 genomes]
rs612258	1.00[EUR][1000 genomes]
rs656473	1.00[EUR][1000 genomes]
rs7171948	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
5	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv977844	chr15:44251952-44264610	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44251000-44267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:44251400-44256800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:44251600-44257000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:44251600-44258600	Weak transcription	Brain Angular Gyrus	brain
5	chr15:44251600-44260400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:44251800-44259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:44252000-44257000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:44252000-44258600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:44252000-44258600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:44252000-44258600	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:44252000-44258800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:44252000-44260400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:44252000-44262000	Weak transcription	Fetal Brain Female	brain
14	chr15:44253200-44257000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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