Variant report

Variant	rs35096247
Chromosome Location	chr5:111561881-111561882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10059647	0.83[ASN][1000 genomes]
rs10085152	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11241159	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11739692	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4311468	0.83[ASN][1000 genomes]
rs4312931	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6421836	0.86[ASN][1000 genomes]
rs7732679	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7732687	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv948869	chr5:111476404-111695183	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv531291	chr5:111497440-111756788	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv599371	chr5:111519018-111676755	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111504800-111586400	Weak transcription	Gastric	stomach
2	chr5:111538600-111563600	Weak transcription	Lung	lung
3	chr5:111554000-111562800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:111554200-111563600	Weak transcription	Left Ventricle	heart
5	chr5:111554200-111563600	Weak transcription	Right Ventricle	heart
6	chr5:111554200-111568400	Weak transcription	Right Atrium	heart
7	chr5:111557000-111563600	Weak transcription	Stomach Mucosa	stomach
8	chr5:111558600-111563200	Weak transcription	Pancreas	Pancrea
9	chr5:111558600-111563400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:111558600-111584400	Weak transcription	Psoas Muscle	Psoas
11	chr5:111558800-111591400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:111559000-111562200	Weak transcription	A549	lung
13	chr5:111559400-111564200	Weak transcription	Liver	Liver
14	chr5:111560200-111563600	Enhancers	Fetal Heart	heart
15	chr5:111561000-111562800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:111561200-111562400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:111561400-111562200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr5:111561400-111562400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr5:111561400-111562600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr5:111561400-111564200	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:111561400-111564400	Weak transcription	Spleen	Spleen
22	chr5:111561600-111562000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr5:111561600-111562000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:111561600-111562200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:111561600-111562400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:111561600-111562400	Enhancers	H9 Cell Line	embryonic stem cell
27	chr5:111561600-111562400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:111561600-111562400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr5:111561600-111562400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr5:111561600-111562800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr5:111561800-111562000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:111561800-111562000	Enhancers	Fetal Lung	lung
33	chr5:111561800-111562200	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links