Variant report

Variant	rs35101027
Chromosome Location	chr8:103408928-103408929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103391372..103393666-chr8:103408885..103410711,2	K562	blood:
2	chr8:103407170..103409937-chr8:103664243..103667320,3	MCF-7	breast:
3	chr8:103404137..103406751-chr8:103406797..103410088,3	K562	blood:
4	chr8:103407714..103410047-chr8:103410343..103411867,2	MCF-7	breast:
5	chr8:103405057..103410665-chr8:103422251..103425173,5	MCF-7	breast:
6	chr8:103406201..103411480-chr8:103421779..103426135,6	MCF-7	breast:
7	chr8:103398120..103402730-chr8:103407201..103410943,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction
ENSG00000238533	Chromatin interaction
ENSG00000104517	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11774038	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11774772	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11778468	1.00[AMR][1000 genomes]
rs11780954	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11780975	0.90[EUR][1000 genomes]
rs11781662	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11782557	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11784155	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13261195	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13266055	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13267660	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13268552	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13270916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13273642	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13278113	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13280613	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16869344	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16869352	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16869362	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16869417	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2305832	1.00[AMR][1000 genomes]
rs28973252	0.82[AMR][1000 genomes]
rs34002127	0.91[AMR][1000 genomes]
rs34609465	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34694718	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34782477	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34837214	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34852161	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35090306	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35368426	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35537579	0.91[AMR][1000 genomes]
rs35624360	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35771800	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3735723	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71518853	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71518855	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71518860	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs718165	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73698742	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7840355	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7843178	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	esv2761454	chr8:103394602-103414235	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103369800-103421000	Weak transcription	Colonic Mucosa	Colon
2	chr8:103372400-103412600	Weak transcription	Fetal Intestine Large	intestine
3	chr8:103372800-103410200	Weak transcription	Fetal Kidney	kidney
4	chr8:103384200-103411600	Weak transcription	Lung	lung
5	chr8:103384200-103416800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:103388400-103416600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:103395800-103420800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:103395800-103422200	Weak transcription	HSMMtube	muscle
9	chr8:103396000-103410200	Weak transcription	Brain Germinal Matrix	brain
10	chr8:103396200-103409600	Weak transcription	Fetal Stomach	stomach
11	chr8:103397000-103413600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:103397400-103420800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:103398600-103420800	Weak transcription	Esophagus	oesophagus
14	chr8:103400800-103414800	Weak transcription	HUVEC	blood vessel
15	chr8:103403400-103409800	Weak transcription	Fetal Thymus	thymus
16	chr8:103403400-103410400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:103403400-103410400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:103403400-103410400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:103403400-103410400	Weak transcription	Fetal Muscle Leg	muscle
20	chr8:103403400-103412400	Weak transcription	Dnd41	blood
21	chr8:103403400-103412400	Weak transcription	NHEK	skin
22	chr8:103403400-103413600	Weak transcription	Gastric	stomach
23	chr8:103403400-103416800	Weak transcription	Placenta	Placenta
24	chr8:103403400-103420000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr8:103403400-103423000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:103403600-103410600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr8:103404000-103412200	Weak transcription	Hela-S3	cervix
28	chr8:103404200-103410000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:103404400-103409800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:103404400-103410600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr8:103404400-103410600	Weak transcription	HSMM	muscle
32	chr8:103404400-103413000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:103404400-103416200	Weak transcription	NHLF	lung
34	chr8:103405000-103416000	Weak transcription	NHDF-Ad	bronchial
35	chr8:103405200-103414800	Weak transcription	Osteobl	bone
36	chr8:103405400-103410600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:103406200-103409000	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr8:103406600-103409000	Enhancers	Primary T cells from cord blood	blood
39	chr8:103406600-103409600	Genic enhancers	K562	blood
40	chr8:103406800-103409000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr8:103406800-103409600	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr8:103406800-103410000	Enhancers	H1 Cell Line	embryonic stem cell
43	chr8:103406800-103410000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr8:103406800-103410000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr8:103407000-103409600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr8:103407000-103409600	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr8:103407000-103410000	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr8:103407000-103417000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr8:103407200-103410200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:103407200-103415000	Weak transcription	NH-A	brain

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