Variant report

Variant	rs35102232
Chromosome Location	chr1:153750650-153750651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:153750360..153753016-chr1:154300040..154302261,2	K562	blood:
2	chr1:153747107..153752136-chr1:153929206..153936862,9	MCF-7	breast:
3	chr1:153747289..153750894-chr1:153961895..153964874,3	MCF-7	breast:
4	chr1:153748212..153751120-chr1:153917241..153919108,2	K562	blood:
5	chr1:153720924..153726415-chr1:153745287..153750957,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233222	Chromatin interaction
ENSG00000160741	Chromatin interaction
ENSG00000143515	Chromatin interaction
ENSG00000143624	Chromatin interaction
ENSG00000143570	Chromatin interaction
ENSG00000198837	Chromatin interaction
ENSG00000243613	Chromatin interaction
ENSG00000177954	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6665473	1.00[EUR][1000 genomes]
rs7547692	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011897	chr1:153613597-153836703	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
4	nsv531892	chr1:153671910-153954090	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	nsv464039	chr1:153708906-153801098	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv547941	chr1:153708906-153801098	Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv817392	chr1:153724807-153870005	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv532551	chr1:153732039-154192279	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153712800-153751800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:153730800-153752600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:153747000-153755400	Weak transcription	Dnd41	blood
4	chr1:153748800-153751000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:153748800-153751000	Enhancers	Spleen	Spleen
6	chr1:153748800-153755400	Weak transcription	HSMM	muscle
7	chr1:153749000-153751000	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:153749000-153755400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:153749000-153755400	Weak transcription	Fetal Kidney	kidney
10	chr1:153749000-153755400	Weak transcription	Thymus	Thymus
11	chr1:153749000-153755600	Enhancers	Pancreas	Pancrea
12	chr1:153749000-153755600	Weak transcription	NH-A	brain
13	chr1:153749200-153750800	Enhancers	Brain Angular Gyrus	brain
14	chr1:153749200-153750800	Enhancers	Right Atrium	heart
15	chr1:153749200-153751200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr1:153749200-153751600	Enhancers	Gastric	stomach
17	chr1:153749200-153752000	Weak transcription	HUVEC	blood vessel
18	chr1:153749200-153752600	Weak transcription	Aorta	Aorta
19	chr1:153749200-153752600	Enhancers	HepG2	liver
20	chr1:153749200-153753800	Enhancers	Right Ventricle	heart
21	chr1:153749200-153755200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:153749200-153755400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:153749200-153755400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr1:153749200-153755400	Weak transcription	Primary T cells from cord blood	blood
25	chr1:153749200-153755400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr1:153749200-153755400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:153749200-153755400	Weak transcription	NHDF-Ad	bronchial
28	chr1:153749200-153755400	Weak transcription	NHLF	lung
29	chr1:153749200-153755600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr1:153749200-153755600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr1:153749200-153755600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:153749400-153750800	Enhancers	Stomach Mucosa	stomach
33	chr1:153749400-153751200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:153749400-153751200	Genic enhancers	Fetal Stomach	stomach
35	chr1:153749400-153751400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:153749400-153751800	Genic enhancers	Esophagus	oesophagus
37	chr1:153749400-153752600	Weak transcription	Small Intestine	intestine
38	chr1:153749400-153755400	Weak transcription	Fetal Brain Female	brain
39	chr1:153749400-153755400	Weak transcription	NHEK	skin
40	chr1:153749600-153750800	Weak transcription	Primary B cells from cord blood	blood
41	chr1:153749600-153753400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr1:153749600-153753400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:153749600-153755000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr1:153749600-153755200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr1:153749600-153755200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:153749600-153755400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr1:153749600-153755400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr1:153749600-153755400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:153749600-153755400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr1:153749600-153755600	Weak transcription	Brain Substantia Nigra	brain

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