Variant report

Variant	rs35102814
Chromosome Location	chr3:146140850-146140851
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:146139318..146141303-chr3:146183434..146185764,2	MCF-7	breast:
2	chr3:146139609..146141816-chr3:146146728..146148840,3	MCF-7	breast:
3	chr3:146139398..146141443-chr3:146220518..146223634,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1054736	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11707383	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11715366	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11716510	0.85[ASN][1000 genomes]
rs11916950	0.85[ASN][1000 genomes]
rs12054301	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13065970	0.83[ASN][1000 genomes]
rs35296568	0.84[ASN][1000 genomes]
rs35783134	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36067998	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4681324	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs473794	0.82[ASN][1000 genomes]
rs474803	0.82[ASN][1000 genomes]
rs488053	0.83[ASN][1000 genomes]
rs491900	0.85[ASN][1000 genomes]
rs498201	0.87[ASN][1000 genomes]
rs500995	0.85[ASN][1000 genomes]
rs506974	0.82[ASN][1000 genomes]
rs512845	0.87[ASN][1000 genomes]
rs514287	0.85[ASN][1000 genomes]
rs523849	0.82[ASN][1000 genomes]
rs524720	0.82[ASN][1000 genomes]
rs527708	0.82[ASN][1000 genomes]
rs533625	0.83[ASN][1000 genomes]
rs536474	0.86[ASN][1000 genomes]
rs536619	0.82[ASN][1000 genomes]
rs536737	0.85[ASN][1000 genomes]
rs546430	0.82[ASN][1000 genomes]
rs557809	0.82[ASN][1000 genomes]
rs56111687	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs563385	0.84[ASN][1000 genomes]
rs575834	0.82[ASN][1000 genomes]
rs62274675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6764342	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs968634	0.82[ASN][1000 genomes]
rs968635	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877617	chr3:146096182-146172109	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877618	chr3:146096182-146192324	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877619	chr3:146106142-146172109	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv877620	chr3:146109354-146172109	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv877621	chr3:146117041-146172109	Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv877622	chr3:146131961-146219740	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146130400-146142800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:146135600-146160400	Weak transcription	Pancreas	Pancrea
3	chr3:146139200-146141200	Enhancers	Osteobl	bone
4	chr3:146139200-146141400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:146139400-146141000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:146139400-146141000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:146139400-146141000	Enhancers	HMEC	breast
8	chr3:146139400-146141000	Enhancers	NHDF-Ad	bronchial
9	chr3:146139400-146141400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:146139400-146141400	Enhancers	NH-A	brain
11	chr3:146139600-146141200	Enhancers	Fetal Stomach	stomach
12	chr3:146139800-146141000	Enhancers	HSMM	muscle
13	chr3:146140200-146141000	Enhancers	A549	lung
14	chr3:146140600-146141600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links