Variant report

Variant	rs35102928
Chromosome Location	chr2:183480963-183480964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10189496	0.85[ASN][1000 genomes]
rs10189650	0.80[AFR][1000 genomes]
rs10204014	0.85[ASN][1000 genomes]
rs10497610	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12693315	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12693316	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12693317	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12693318	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12990399	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12991615	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023449	1.00[ASN][1000 genomes]
rs13382205	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13389338	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13389590	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13402255	0.85[ASN][1000 genomes]
rs13416838	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13419447	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13419727	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13420165	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13423751	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13426633	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13432896	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16823445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16823448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16823449	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16823467	1.00[ASN][1000 genomes]
rs34984487	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35272130	0.80[AFR][1000 genomes]
rs35613878	0.82[AFR][1000 genomes]
rs35615098	0.82[AMR][1000 genomes]
rs35750735	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71427857	1.00[ASN][1000 genomes]
rs7577744	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757842	chr2:183437700-183835084	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	esv2759104	chr2:183437700-183835084	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv875479	chr2:183442443-183482466	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv875480	chr2:183442443-183489249	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1837855	chr2:183452578-183499313	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999603	chr2:183465151-183551522	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183459600-183493800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:183478600-183482800	Enhancers	HSMM	muscle
3	chr2:183478600-183486000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:183479000-183481400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:183479800-183481200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:183479800-183482600	Enhancers	Osteobl	bone
7	chr2:183479800-183482800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:183479800-183483800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:183480000-183483600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:183480000-183483800	Enhancers	NHDF-Ad	bronchial
11	chr2:183480400-183484000	Enhancers	NHLF	lung
12	chr2:183480800-183482600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:183480800-183484200	Enhancers	HUVEC	blood vessel

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