Variant report
| Variant | rs35103257 |
|---|---|
| Chromosome Location | chr15:75277412-75277413 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:75248070..75250968-chr15:75277298..75278914,2 | K562 | blood: | |
| 2 | chr15:75275080..75277543-chr15:75287594..75290421,2 | K562 | blood: | |
| 3 | chr15:75276799..75279129-chr15:75284441..75286029,2 | K562 | blood: | |
| 4 | chr15:75227438..75230244-chr15:75276379..75279123,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000178718 | Chromatin interaction |
| ENSG00000198794 | Chromatin interaction |
| ENSG00000178741 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:3)
| rs_ID | r2[population] |
|---|---|
| rs34965545 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs35116156 | 0.83[AMR][1000 genomes] |
| rs3812945 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv569993 | chr15:75242155-75483752 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv1612 | chr15:75247725-75281284 | Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
| 3 | nsv542435 | chr15:75271788-75321117 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:6)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs35103257 | MPI | Cis_1M | lymphoblastoid | RTeQTL |
| rs35103257 | SCAMP5 | cis | lung | GTEx |
| rs35103257 | SCAMP5 | cis | Artery Tibial | GTEx |
| rs35103257 | SCAMP2 | Cis_1M | lymphoblastoid | RTeQTL |
| rs35103257 | COX5A | Cis_1M | lymphoblastoid | RTeQTL |
| rs35103257 | SCAMP2 | cis | Whole Blood | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
