Variant report

Variant	rs35103502
Chromosome Location	chr14:68223366-68223367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12878157	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880908	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881114	1.00[ASN][1000 genomes]
rs17782224	1.00[ASN][1000 genomes]
rs17782871	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34157082	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34186579	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34612763	1.00[ASN][1000 genomes]
rs34666247	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67583198	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71421388	0.93[EUR][1000 genomes]
rs7410	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68202800-68230800	Weak transcription	Right Atrium	heart
2	chr14:68206200-68251000	Weak transcription	K562	blood
3	chr14:68211600-68230800	Weak transcription	Stomach Mucosa	stomach
4	chr14:68212400-68282800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:68212800-68224000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr14:68212800-68224400	Strong transcription	Brain Hippocampus Middle	brain
7	chr14:68212800-68225400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:68212800-68225400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr14:68212800-68229800	Strong transcription	Fetal Intestine Large	intestine
10	chr14:68213000-68225400	Strong transcription	Adipose Nuclei	Adipose
11	chr14:68213000-68225400	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr14:68213000-68229800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr14:68213000-68233000	Strong transcription	Primary hematopoietic stem cells	blood
14	chr14:68213000-68233000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr14:68213000-68280800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:68213200-68223400	Strong transcription	Primary B cells from cord blood	blood
17	chr14:68213200-68224400	Strong transcription	Primary T cells from cord blood	blood
18	chr14:68213200-68229800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr14:68213200-68243200	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:68213400-68225400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:68213400-68281200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:68213600-68225200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:68213600-68229200	Strong transcription	Placenta	Placenta
24	chr14:68213600-68279600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:68213800-68225400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr14:68213800-68225800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr14:68213800-68228800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:68213800-68237000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr14:68213800-68280600	Strong transcription	Liver	Liver
30	chr14:68214000-68224200	Strong transcription	Thymus	Thymus
31	chr14:68214000-68225400	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr14:68214000-68232000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr14:68214000-68258200	Strong transcription	Brain Germinal Matrix	brain
34	chr14:68214600-68224000	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr14:68214600-68224200	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr14:68214600-68224200	Strong transcription	Fetal Intestine Small	intestine
37	chr14:68214600-68224200	Strong transcription	Spleen	Spleen
38	chr14:68214600-68224400	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr14:68214600-68224400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr14:68214600-68224400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:68214600-68224400	Strong transcription	Brain Substantia Nigra	brain
42	chr14:68214600-68225200	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr14:68214600-68232800	Strong transcription	Primary B cells from peripheral blood	blood
44	chr14:68214600-68281000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:68214800-68224000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:68214800-68224000	Strong transcription	Brain Anterior Caudate	brain
47	chr14:68214800-68224400	Strong transcription	Fetal Lung	lung
48	chr14:68214800-68266800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr14:68214800-68276200	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr14:68214800-68280200	Strong transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links