Variant report

Variant	rs35103910
Chromosome Location	chr8:120798927-120798928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10087723	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10088232	0.81[ASN][1000 genomes]
rs10095282	0.86[ASN][1000 genomes]
rs10096486	0.90[ASN][1000 genomes]
rs10096846	0.92[ASN][1000 genomes]
rs10101278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102038	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10103886	0.87[ASN][1000 genomes]
rs10109513	0.90[ASN][1000 genomes]
rs10109718	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10109808	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10109901	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10109951	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10110061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110601	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10113252	0.88[ASN][1000 genomes]
rs10113562	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10505374	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1055131	0.82[ASN][1000 genomes]
rs1055133	0.82[ASN][1000 genomes]
rs11985300	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11989053	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12155707	0.87[ASN][1000 genomes]
rs12542706	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12543087	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12545479	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12707876	0.89[ASN][1000 genomes]
rs12707880	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13252708	0.87[ASN][1000 genomes]
rs13253139	0.87[ASN][1000 genomes]
rs13255420	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13255850	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13257002	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13258336	0.83[ASN][1000 genomes]
rs13261032	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13262434	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13268676	0.90[ASN][1000 genomes]
rs13270831	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13272852	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs14027	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1433951	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1433952	0.88[ASN][1000 genomes]
rs1433953	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1469755	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1509348	0.88[ASN][1000 genomes]
rs1567358	0.88[ASN][1000 genomes]
rs1567359	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16893025	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16893027	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16893071	0.89[ASN][1000 genomes]
rs16893077	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16893101	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16893104	0.91[ASN][1000 genomes]
rs16893109	0.91[ASN][1000 genomes]
rs16893113	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16893140	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1960438	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1976575	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2043430	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2043431	0.89[ASN][1000 genomes]
rs2048239	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2063282	0.92[ASN][1000 genomes]
rs2136374	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2136375	0.80[ASN][1000 genomes]
rs2289011	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2326377	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2326378	0.92[ASN][1000 genomes]
rs2634	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28421406	0.91[ASN][1000 genomes]
rs28486048	0.83[ASN][1000 genomes]
rs28486074	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28576821	0.91[ASN][1000 genomes]
rs28634937	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28665481	0.91[ASN][1000 genomes]
rs28711081	0.86[ASN][1000 genomes]
rs28715681	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28736344	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28756749	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34070855	0.87[ASN][1000 genomes]
rs34718068	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35019302	0.83[ASN][1000 genomes]
rs35449013	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35496588	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35521072	0.87[ASN][1000 genomes]
rs35660840	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35679846	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35954443	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3812463	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4870955	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4870956	0.86[ASN][1000 genomes]
rs4871578	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4871595	0.88[ASN][1000 genomes]
rs4871597	0.81[ASN][1000 genomes]
rs4871599	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871629	0.88[ASN][1000 genomes]
rs4871634	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871640	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871642	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4871648	0.86[ASN][1000 genomes]
rs4871659	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62526565	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6469841	0.88[ASN][1000 genomes]
rs6469846	0.88[ASN][1000 genomes]
rs6469849	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6469852	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6469853	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6469854	0.83[ASN][1000 genomes]
rs67905698	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6983932	0.83[ASN][1000 genomes]
rs6989559	0.83[ASN][1000 genomes]
rs6989791	0.87[ASN][1000 genomes]
rs6992109	0.82[ASN][1000 genomes]
rs6992632	0.86[ASN][1000 genomes]
rs6994604	0.91[ASN][1000 genomes]
rs6996250	0.86[ASN][1000 genomes]
rs6997976	0.88[ASN][1000 genomes]
rs6998058	0.81[ASN][1000 genomes]
rs7005200	0.86[ASN][1000 genomes]
rs7009073	0.94[ASN][1000 genomes]
rs7011974	0.92[ASN][1000 genomes]
rs7012791	0.85[ASN][1000 genomes]
rs7012857	0.86[ASN][1000 genomes]
rs7017010	0.87[ASN][1000 genomes]
rs7017045	0.88[ASN][1000 genomes]
rs7017279	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7813438	0.88[ASN][1000 genomes]
rs7813651	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7813680	0.81[ASN][1000 genomes]
rs7821501	0.90[ASN][1000 genomes]
rs7825803	0.87[ASN][1000 genomes]
rs7827482	0.86[ASN][1000 genomes]
rs7829390	0.82[ASN][1000 genomes]
rs7832755	0.81[ASN][1000 genomes]
rs7833112	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7833490	0.87[ASN][1000 genomes]
rs7837213	0.91[ASN][1000 genomes]
rs7837589	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7839110	0.88[ASN][1000 genomes]
rs7843304	0.94[ASN][1000 genomes]
rs9297603	0.85[ASN][1000 genomes]
rs9297604	0.89[ASN][1000 genomes]
rs9297605	0.81[ASN][1000 genomes]
rs9693207	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1021071	chr8:120589963-120968317	Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv465789	chr8:120636850-120994394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv612111	chr8:120636850-120994394	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv427826	chr8:120642181-120953395	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120742600-120812800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:120744000-120814600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:120744400-120824400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:120760600-120804600	Weak transcription	Psoas Muscle	Psoas
5	chr8:120761600-120800800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:120767200-120807400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr8:120780400-120801200	Weak transcription	Brain Substantia Nigra	brain
8	chr8:120781000-120807000	Weak transcription	Brain Angular Gyrus	brain
9	chr8:120781000-120813800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr8:120781200-120801000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr8:120781200-120801400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:120781200-120804400	Weak transcription	Spleen	Spleen
13	chr8:120781200-120804600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:120781200-120807000	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:120781200-120807800	Weak transcription	NHLF	lung
16	chr8:120781200-120812800	Weak transcription	Colonic Mucosa	Colon
17	chr8:120781200-120829400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:120781400-120802800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr8:120781400-120803000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:120781400-120804400	Weak transcription	Esophagus	oesophagus
21	chr8:120781400-120804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:120781400-120804800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:120781400-120805000	Weak transcription	Gastric	stomach
24	chr8:120781400-120812800	Weak transcription	Right Ventricle	heart
25	chr8:120781400-120813800	Weak transcription	Aorta	Aorta
26	chr8:120781600-120812800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr8:120781600-120844200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr8:120782800-120799000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:120783800-120804400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr8:120785200-120812000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr8:120785200-120812600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:120785600-120810600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr8:120785800-120808800	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr8:120785800-120810400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:120786400-120799000	Strong transcription	Dnd41	blood
36	chr8:120786600-120799000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr8:120786600-120799200	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr8:120786600-120810000	Strong transcription	Fetal Thymus	thymus
39	chr8:120787800-120801600	Weak transcription	Small Intestine	intestine
40	chr8:120788000-120802800	Weak transcription	Lung	lung
41	chr8:120788800-120799400	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr8:120788800-120805800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:120789000-120799000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr8:120790800-120801600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr8:120791000-120833200	Weak transcription	Fetal Heart	heart
46	chr8:120791200-120801000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr8:120791400-120801200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr8:120791400-120807200	Weak transcription	Fetal Brain Male	brain
49	chr8:120792000-120801800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr8:120792200-120801400	Weak transcription	Thymus	Thymus

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