Variant report

Variant	rs35104209
Chromosome Location	chr7:150218475-150218476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12703077	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13226709	0.95[EUR][1000 genomes]
rs3735079	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725905	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4725906	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56330403	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62501523	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1025129	chr7:150146593-150266217	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1031309	chr7:150171651-150222230	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3395746	chr7:150181141-150300680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150211000-150219000	Active TSS	Right Atrium	heart
2	chr7:150211400-150218600	Active TSS	Duodenum Mucosa	Duodenum
3	chr7:150212200-150218600	Active TSS	Primary B cells from cord blood	blood
4	chr7:150214000-150218600	Weak transcription	Placenta	Placenta
5	chr7:150214200-150218600	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:150214600-150218800	Transcr. at gene 5' and 3'	Dnd41	blood
7	chr7:150214800-150218600	Weak transcription	Liver	Liver
8	chr7:150215400-150219200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:150215800-150219200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:150216000-150219200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
11	chr7:150216800-150218800	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:150216800-150218800	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
13	chr7:150216800-150219000	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:150216800-150219200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr7:150216800-150219200	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:150216800-150219200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
17	chr7:150216800-150219200	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
18	chr7:150216800-150219200	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:150216800-150219200	Strong transcription	Fetal Thymus	thymus
20	chr7:150216800-150219400	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
21	chr7:150216800-150219400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
22	chr7:150217000-150218600	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr7:150217000-150218600	ZNF genes & repeats	GM12878-XiMat	blood
24	chr7:150217000-150218800	Active TSS	Psoas Muscle	Psoas
25	chr7:150217000-150219000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr7:150217000-150219200	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
27	chr7:150217000-150219400	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
28	chr7:150217000-150219400	Transcr. at gene 5' and 3'	Primary T killer naive cells fromperipheralblood	blood
29	chr7:150217400-150218600	Genic enhancers	Primary monocytes fromperipheralblood	blood
30	chr7:150217600-150219000	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr7:150217600-150219000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr7:150217800-150219200	Weak transcription	Thymus	Thymus
33	chr7:150217800-150220000	Weak transcription	Spleen	Spleen
34	chr7:150218000-150219000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:150218000-150220800	Weak transcription	HUVEC	blood vessel
36	chr7:150218200-150218600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
37	chr7:150218200-150218600	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
38	chr7:150218200-150219200	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
39	chr7:150218400-150218600	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr7:150218400-150218600	Active TSS	Fetal Muscle Leg	muscle
41	chr7:150218400-150218600	Active TSS	Rectal Mucosa Donor 31	rectum
42	chr7:150218400-150218600	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr7:150218400-150219200	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links