Variant report

Variant	rs35107435
Chromosome Location	chr11:27249330-27249331
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1038101	1.00[AFR][1000 genomes]
rs61887480	1.00[AFR][1000 genomes]
rs61890660	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv897147	chr11:26983363-27258899	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv467782	chr11:27192715-27496161	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv553914	chr11:27192715-27496161	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35107435	MUC15	cis	thalamus	BrainEAC

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:27238400-27249400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:27241200-27250200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:27241200-27250600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:27241200-27250600	Weak transcription	Osteobl	bone
5	chr11:27241200-27250800	Weak transcription	NHDF-Ad	bronchial
6	chr11:27241200-27251600	Weak transcription	HSMMtube	muscle
7	chr11:27248000-27253400	Weak transcription	Esophagus	oesophagus
8	chr11:27248600-27256800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:27249000-27250600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:27249000-27251000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:27249000-27252000	Enhancers	Fetal Stomach	stomach
12	chr11:27249000-27254400	Enhancers	Colon Smooth Muscle	Colon
13	chr11:27249200-27249400	Enhancers	NH-A	brain
14	chr11:27249200-27249400	Enhancers	NHEK	skin
15	chr11:27249200-27249600	Enhancers	Fetal Muscle Trunk	muscle
16	chr11:27249200-27249800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:27249200-27250800	Enhancers	HMEC	breast
18	chr11:27249200-27251000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr11:27249200-27251000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:27249200-27251200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:27249200-27251200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:27249200-27251400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:27249200-27251800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:27249200-27252000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr11:27249200-27253600	Enhancers	Rectal Smooth Muscle	rectum

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