Variant report

Variant	rs35110067
Chromosome Location	chr7:12699613-12699614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51676836..51677705-chr7:12699342..12699897,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12540948	0.95[EUR][1000 genomes]
rs13221298	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13221458	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13222937	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13224841	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13244046	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34187140	0.85[EUR][1000 genomes]
rs34250068	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34811312	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35091099	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55831963	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56031342	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56178138	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57814372	0.89[EUR][1000 genomes]
rs66931243	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71536892	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73048799	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73053419	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73053430	0.85[EUR][1000 genomes]
rs892714	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1021371	chr7:12530491-12710429	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1017577	chr7:12530491-12722947	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1030764	chr7:12532287-12710429	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv830907	chr7:12661239-12818250	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	nsv830908	chr7:12695007-12870475	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12664800-12700200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:12675800-12699800	Weak transcription	Esophagus	oesophagus
3	chr7:12693600-12699800	Weak transcription	NH-A	brain
4	chr7:12694000-12699800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:12694000-12699800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:12695600-12699800	Weak transcription	Osteobl	bone
7	chr7:12695800-12699800	Weak transcription	NHEK	skin
8	chr7:12696200-12699800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:12698400-12700000	Weak transcription	A549	lung
10	chr7:12699200-12699800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:12699200-12701400	Enhancers	Hela-S3	cervix
12	chr7:12699200-12701600	Enhancers	Placenta	Placenta
13	chr7:12699400-12700200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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