Variant report

Variant	rs351161
Chromosome Location	chr15:74546958-74546959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74542391..74545216-chr15:74545436..74547097,2	MCF-7	breast:
2	chr15:74544782..74547040-chr15:74550761..74553089,2	MCF-7	breast:
3	chr15:74546230..74548838-chr15:74551337..74552846,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs168433	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs351151	0.84[AFR][1000 genomes]
rs351167	1.00[AMR][1000 genomes]
rs351171	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74542600-74547600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:74545000-74547000	Weak transcription	Ovary	ovary
3	chr15:74545000-74550600	Weak transcription	Fetal Heart	heart
4	chr15:74545200-74548400	Weak transcription	Lung	lung
5	chr15:74545800-74550800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:74546000-74549400	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:74546000-74549800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:74546000-74550800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:74546000-74550800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:74546200-74547800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:74546200-74549200	Weak transcription	Brain Germinal Matrix	brain
12	chr15:74546200-74549200	Weak transcription	Fetal Brain Male	brain
13	chr15:74546200-74550800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:74546200-74550800	Weak transcription	Brain Angular Gyrus	brain
15	chr15:74546200-74550800	Weak transcription	Spleen	Spleen
16	chr15:74546200-74551200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:74546200-74551200	Weak transcription	Fetal Brain Female	brain
18	chr15:74546200-74551600	Weak transcription	Brain Anterior Caudate	brain
19	chr15:74546800-74547000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:74546800-74547000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr15:74546800-74547000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:74546800-74547600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links