Variant report

Variant	rs35121681
Chromosome Location	chr7:127355371-127355372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127354365..127356905-chr7:127361625..127363196,2	K562	blood:
2	chr7:127354964..127357092-chr7:127358682..127360434,2	K562	blood:
3	chr7:127350301..127352881-chr7:127354512..127357487,2	MCF-7	breast:
4	chr7:127346393..127350430-chr7:127351346..127355414,4	K562	blood:

Variant related genes	Relation type
ENSG00000197157	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10215276	0.85[ASN][1000 genomes]
rs10251423	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10251548	0.90[EUR][1000 genomes]
rs10255861	0.81[ASN][1000 genomes]
rs10260037	0.85[ASN][1000 genomes]
rs1029927	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10954163	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11521053	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11971935	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11972774	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11976841	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11976946	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11977012	0.81[ASN][1000 genomes]
rs11977915	0.81[ASN][1000 genomes]
rs11980318	0.81[ASN][1000 genomes]
rs12531440	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12533846	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12539728	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12540865	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13236900	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13237048	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1362268	0.83[ASN][1000 genomes]
rs141450	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16885524	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17151241	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17151270	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17716738	0.81[ASN][1000 genomes]
rs17718395	0.92[ASN][1000 genomes]
rs1860934	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1881084	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2014583	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2016786	0.97[EUR][1000 genomes]
rs2043982	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2119452	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2119453	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2141259	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2402866	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2402867	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2402870	0.97[EUR][1000 genomes]
rs325440	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs325442	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325444	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325445	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325446	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325447	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325451	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35176520	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35940771	0.97[EUR][1000 genomes]
rs35971861	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3779529	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3779530	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3808092	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3808093	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3808095	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3808097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3808105	0.81[ASN][1000 genomes]
rs3808106	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3808107	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3808112	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3824000	0.85[ASN][1000 genomes]
rs4728077	0.81[ASN][1000 genomes]
rs4731376	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4731378	0.97[EUR][1000 genomes]
rs55694225	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56306023	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58583807	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6467145	0.97[EUR][1000 genomes]
rs6961381	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6963455	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6968199	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6969880	0.92[EUR][1000 genomes]
rs712712	0.95[EUR][1000 genomes]
rs712716	0.97[EUR][1000 genomes]
rs73234861	0.81[ASN][1000 genomes]
rs73234862	0.81[ASN][1000 genomes]
rs73234880	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73234882	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73234897	0.92[ASN][1000 genomes]
rs73234901	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs741599	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs759843	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7785050	0.92[EUR][1000 genomes]
rs7786041	0.85[ASN][1000 genomes]
rs7797663	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7799882	0.97[EUR][1000 genomes]
rs917832	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs918793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs972088	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs972089	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs972090	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1031658	chr7:127266882-127376775	Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv831123	chr7:127289511-127510396	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv1030387	chr7:127348973-127455890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127324800-127372200	Weak transcription	Fetal Heart	heart
2	chr7:127325600-127363000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:127326000-127355600	Strong transcription	Duodenum Mucosa	Duodenum
4	chr7:127326400-127356600	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:127326600-127379800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr7:127326800-127371000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:127330000-127355600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:127331600-127375600	Strong transcription	Fetal Thymus	thymus
9	chr7:127334400-127376600	Weak transcription	Fetal Brain Male	brain
10	chr7:127335000-127359400	Strong transcription	Hela-S3	cervix
11	chr7:127339000-127357400	Weak transcription	Small Intestine	intestine
12	chr7:127339400-127371000	Weak transcription	Right Atrium	heart
13	chr7:127344600-127371200	Weak transcription	Brain Germinal Matrix	brain
14	chr7:127345000-127362000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:127345200-127357400	Weak transcription	Spleen	Spleen
16	chr7:127345400-127361000	Weak transcription	Colonic Mucosa	Colon
17	chr7:127347800-127365200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:127347800-127383000	Strong transcription	NHEK	skin
19	chr7:127348600-127357800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:127349000-127360400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr7:127349200-127356000	Strong transcription	Osteobl	bone
22	chr7:127349400-127357400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:127349400-127357400	Weak transcription	Brain Anterior Caudate	brain
24	chr7:127349400-127357400	Weak transcription	Esophagus	oesophagus
25	chr7:127349400-127358200	Weak transcription	Pancreas	Pancrea
26	chr7:127349600-127357400	Weak transcription	Aorta	Aorta
27	chr7:127349600-127360400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:127349600-127371200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:127350600-127358200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr7:127350800-127355400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr7:127351400-127357600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:127351400-127358000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr7:127351400-127361000	Weak transcription	Ovary	ovary
34	chr7:127351400-127361200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr7:127351400-127362600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr7:127351400-127365800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:127351400-127365800	Strong transcription	HSMM	muscle
38	chr7:127351400-127366200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:127351400-127368400	Weak transcription	Stomach Mucosa	stomach
40	chr7:127351400-127375600	Strong transcription	Liver	Liver
41	chr7:127351400-127383800	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr7:127351600-127382200	Strong transcription	K562	blood
43	chr7:127351800-127355600	Strong transcription	Fetal Muscle Leg	muscle
44	chr7:127351800-127355800	Strong transcription	Primary B cells from cord blood	blood
45	chr7:127351800-127356200	Strong transcription	Primary B cells from peripheral blood	blood
46	chr7:127351800-127356200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr7:127351800-127356200	Strong transcription	Dnd41	blood
48	chr7:127351800-127356400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr7:127351800-127357400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr7:127351800-127360800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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