Variant report

Variant	rs351217
Chromosome Location	chr15:74491799-74491800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74491764-74491849	A549	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74491398..74493100-chr15:74498606..74500534,2	MCF-7	breast:
2	chr15:74483852..74487473-chr15:74489633..74493518,4	K562	blood:
3	chr15:74490081..74492588-chr15:74507681..74510665,2	MCF-7	breast:
4	chr15:74481853..74488513-chr15:74489689..74497281,13	MCF-7	breast:
5	chr15:74209119..74211492-chr15:74491566..74493612,2	MCF-7	breast:
6	chr15:74421502..74423343-chr15:74491775..74494417,2	MCF-7	breast:

No data

Variant related genes	Relation type
STRA6	TF binding region
ENSG00000259264	TF binding region
ENSG00000248540	Chromatin interaction
ENSG00000140481	Chromatin interaction
ENSG00000137868	Chromatin interaction
ENSG00000259264	Chromatin interaction
ENSG00000167178	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs351221	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs403697	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4887117	0.87[YRI][hapmap]
rs503893	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74466200-74492800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:74469200-74491800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr15:74469400-74493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:74470800-74492800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:74480600-74491800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:74485400-74493000	Weak transcription	Fetal Thymus	thymus
7	chr15:74485800-74492600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:74487600-74492600	Weak transcription	GM12878-XiMat	blood
9	chr15:74487800-74492600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:74488000-74492600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:74488000-74492800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:74488400-74492600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:74488400-74492800	Weak transcription	Fetal Kidney	kidney
14	chr15:74488600-74492000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:74489200-74492000	Enhancers	Hela-S3	cervix
16	chr15:74489200-74492600	Weak transcription	Left Ventricle	heart
17	chr15:74489200-74492600	Weak transcription	Ovary	ovary
18	chr15:74489200-74492600	Weak transcription	Right Ventricle	heart
19	chr15:74489200-74492800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:74489200-74509600	Weak transcription	Gastric	stomach
21	chr15:74489400-74492600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:74489400-74492600	Weak transcription	Fetal Lung	lung
23	chr15:74489400-74492600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:74489400-74492600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr15:74489400-74492600	Weak transcription	Osteobl	bone
26	chr15:74489400-74492800	Weak transcription	Lung	lung
27	chr15:74489400-74492800	Weak transcription	NHLF	lung
28	chr15:74489400-74499000	Weak transcription	Brain Anterior Caudate	brain
29	chr15:74489600-74492000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:74489600-74492600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:74489600-74492600	Weak transcription	Fetal Muscle Leg	muscle
32	chr15:74489600-74492600	Weak transcription	Spleen	Spleen
33	chr15:74489600-74492600	Weak transcription	NHDF-Ad	bronchial
34	chr15:74489800-74492600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:74489800-74492800	Weak transcription	Fetal Heart	heart
36	chr15:74490000-74492600	Weak transcription	HSMM	muscle
37	chr15:74490000-74492800	Weak transcription	HSMMtube	muscle
38	chr15:74490200-74493800	Weak transcription	Colonic Mucosa	Colon
39	chr15:74490400-74492000	Weak transcription	Fetal Intestine Small	intestine
40	chr15:74490400-74492600	Weak transcription	Right Atrium	heart
41	chr15:74490600-74491800	Genic enhancers	A549	lung
42	chr15:74490600-74496200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:74490800-74492600	Weak transcription	Adipose Nuclei	Adipose
44	chr15:74490800-74493000	Enhancers	NH-A	brain
45	chr15:74491000-74492200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:74491000-74503200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:74491200-74491800	Enhancers	Esophagus	oesophagus
48	chr15:74491200-74492800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:74491400-74491800	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr15:74491400-74492000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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