Variant report

Variant	rs351239
Chromosome Location	chr15:74476630-74476631
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74466900..74472029-chr15:74474380..74478364,5	K562	blood:
2	chr15:74476268..74481114-chr15:74481144..74486021,6	MCF-7	breast:
3	chr15:74466900..74472644-chr15:74474380..74478364,5	K562	blood:
4	chr15:74476521..74478452-chr15:74481567..74483240,2	K562	blood:
5	chr15:74474607..74476974-chr15:74483546..74486134,2	K562	blood:

Variant related genes	Relation type
ENSG00000261543	Chromatin interaction
ENSG00000137868	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10519048	1.00[EUR][1000 genomes]
rs2119176	1.00[AMR][1000 genomes]
rs351162	1.00[EUR][1000 genomes]
rs351228	1.00[EUR][1000 genomes]
rs351236	1.00[EUR][1000 genomes]
rs7169600	1.00[AMR][1000 genomes]
rs74023444	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1050884	chr15:74394983-74489413	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74466200-74492800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:74466600-74480600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:74469200-74491800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:74469400-74487600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:74469400-74493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:74470600-74484000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:74470800-74492800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:74471800-74478000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:74472000-74477400	Genic enhancers	Placenta	Placenta
10	chr15:74472400-74477200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:74473200-74478000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:74473200-74478000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:74473400-74477600	Weak transcription	Osteobl	bone
14	chr15:74473600-74477000	Weak transcription	GM12878-XiMat	blood
15	chr15:74473600-74477400	Weak transcription	Gastric	stomach
16	chr15:74473600-74477800	Weak transcription	HMEC	breast
17	chr15:74473600-74477800	Weak transcription	NH-A	brain
18	chr15:74473600-74478000	Weak transcription	Fetal Thymus	thymus
19	chr15:74473600-74478200	Weak transcription	HSMM	muscle
20	chr15:74473600-74488200	Weak transcription	Right Atrium	heart
21	chr15:74473800-74476800	Weak transcription	Spleen	Spleen
22	chr15:74473800-74477600	Weak transcription	NHDF-Ad	bronchial
23	chr15:74473800-74477800	Weak transcription	Esophagus	oesophagus
24	chr15:74474000-74483400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:74474600-74487200	Weak transcription	Fetal Intestine Small	intestine
26	chr15:74475200-74480000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:74475400-74477200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:74475600-74478400	Strong transcription	Fetal Stomach	stomach
29	chr15:74475600-74483000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:74476400-74482600	Weak transcription	A549	lung
31	chr15:74476600-74476800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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