Variant report

Variant	rs35132275
Chromosome Location	chr13:76125649-76125650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:76124018..76125732-chr13:76125795..76127481,2	MCF-7	breast:
2	chr13:76124376..76126025-chr13:76132730..76134454,2	K562	blood:
3	chr13:76055434..76058277-chr13:76123047..76126766,3	K562	blood:
4	chr13:76109717..76113590-chr13:76122029..76126081,5	MCF-7	breast:
5	chr13:76110734..76112526-chr13:76124795..76127675,2	K562	blood:

Variant related genes	Relation type
ENSG00000188243	Chromatin interaction
ENSG00000136111	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1050235	0.82[EUR][1000 genomes]
rs12859594	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12859711	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12861744	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12861774	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12865529	0.90[EUR][1000 genomes]
rs12866747	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12869081	0.82[EUR][1000 genomes]
rs12870619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12871445	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17064647	0.90[EUR][1000 genomes]
rs2031234	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34072684	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34241221	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34407556	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34572351	0.82[EUR][1000 genomes]
rs34949196	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35132045	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35352582	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35556048	0.90[EUR][1000 genomes]
rs35596538	0.90[EUR][1000 genomes]
rs35631959	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35680815	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35797826	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35853105	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35901810	0.93[EUR][1000 genomes]
rs36043532	0.82[EUR][1000 genomes]
rs4885302	0.82[EUR][1000 genomes]
rs4885303	0.82[EUR][1000 genomes]
rs4885304	0.82[EUR][1000 genomes]
rs4885310	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4885311	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4885315	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4885327	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6562904	0.82[EUR][1000 genomes]
rs6562910	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6562911	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66528354	0.81[EUR][1000 genomes]
rs66635712	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66808557	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67051742	0.90[EUR][1000 genomes]
rs67211435	0.82[EUR][1000 genomes]
rs67270540	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67532736	0.82[EUR][1000 genomes]
rs67656352	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68017902	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68044755	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68052366	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71215998	0.82[EUR][1000 genomes]
rs7321611	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7324560	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7325969	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7337186	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7986201	0.95[EUR][1000 genomes]
rs9530443	0.82[EUR][1000 genomes]
rs9530444	0.82[EUR][1000 genomes]
rs9543950	0.82[EUR][1000 genomes]
rs9543952	0.82[EUR][1000 genomes]
rs9543961	0.82[EUR][1000 genomes]
rs9543962	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv900562	chr13:76072743-76176680	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv900563	chr13:76093935-76169347	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv900564	chr13:76100090-76156136	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv900565	chr13:76111280-76169347	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv900566	chr13:76123678-76153748	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv900567	chr13:76123678-76156136	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv900568	chr13:76123678-76159104	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv900569	chr13:76123678-76167433	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv900570	chr13:76123678-76176680	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv900571	chr13:76123678-76207565	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76123400-76125800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr13:76124600-76183000	Weak transcription	Small Intestine	intestine
3	chr13:76124800-76126400	Weak transcription	HSMM	muscle
4	chr13:76124800-76126600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr13:76124800-76127400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:76124800-76127600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr13:76124800-76127800	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:76124800-76127800	Weak transcription	Left Ventricle	heart
9	chr13:76124800-76128000	Weak transcription	Aorta	Aorta
10	chr13:76124800-76128000	Weak transcription	Ovary	ovary
11	chr13:76124800-76128400	Weak transcription	HSMMtube	muscle
12	chr13:76124800-76128600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr13:76124800-76129000	Weak transcription	Esophagus	oesophagus
14	chr13:76124800-76129200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr13:76124800-76130200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:76124800-76130800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:76124800-76135200	Weak transcription	Pancreas	Pancrea
18	chr13:76124800-76146400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:76124800-76146600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr13:76124800-76146600	Weak transcription	Lung	lung
21	chr13:76124800-76147600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:76124800-76164000	Weak transcription	Spleen	Spleen
23	chr13:76124800-76167600	Weak transcription	Gastric	stomach
24	chr13:76124800-76170600	Weak transcription	Colonic Mucosa	Colon
25	chr13:76125000-76125800	Enhancers	Primary B cells from cord blood	blood
26	chr13:76125000-76126400	Enhancers	Primary T cells from cord blood	blood
27	chr13:76125000-76126600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr13:76125000-76126800	Enhancers	HepG2	liver
29	chr13:76125000-76127200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr13:76125000-76127400	Weak transcription	Fetal Kidney	kidney
31	chr13:76125000-76127800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr13:76125000-76127800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr13:76125000-76128600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr13:76125000-76129200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr13:76125000-76129200	Weak transcription	Fetal Stomach	stomach
36	chr13:76125000-76132400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr13:76125000-76141400	Weak transcription	Fetal Lung	lung
38	chr13:76125000-76143400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr13:76125000-76147600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr13:76125000-76156200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr13:76125000-76158000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr13:76125000-76192800	Weak transcription	Brain Substantia Nigra	brain
43	chr13:76125000-76209600	Weak transcription	Right Ventricle	heart
44	chr13:76125200-76125800	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr13:76125200-76126200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr13:76125200-76126400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr13:76125200-76126400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr13:76125200-76126600	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr13:76125200-76126600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr13:76125200-76126800	Genic enhancers	NHEK	skin

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