Variant report

Variant	rs35134798
Chromosome Location	chr12:106631083-106631084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106626541..106632087-chr12:106638755..106642966,8	MCF-7	breast:
2	chr12:106630484..106633329-chr12:106636143..106637779,2	K562	blood:
3	chr12:106620940..106625050-chr12:106630217..106634289,4	MCF-7	breast:
4	chr12:106627619..106631130-chr12:106633186..106636182,4	MCF-7	breast:
5	chr12:106616785..106619757-chr12:106628880..106631149,2	MCF-7	breast:
6	chr12:106630802..106633610-chr12:106666760..106669656,2	MCF-7	breast:
7	chr12:106627724..106631160-chr12:106750781..106752959,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000013503	Chromatin interaction
ENSG00000136026	Chromatin interaction
ENSG00000258355	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12424255	1.00[ASN][1000 genomes]
rs12426038	1.00[ASN][1000 genomes]
rs12426351	1.00[ASN][1000 genomes]
rs12820157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12830330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17216556	1.00[ASN][1000 genomes]
rs3759303	1.00[ASN][1000 genomes]
rs3782700	1.00[ASN][1000 genomes]
rs3782702	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830730	chr12:106621530-106642222	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1839947	chr12:106622186-106642064	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1797996	chr12:106622186-106642222	Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106618000-106632000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:106618000-106632200	Weak transcription	Psoas Muscle	Psoas
3	chr12:106618600-106632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:106621200-106632000	Weak transcription	Brain Hippocampus Middle	brain
5	chr12:106621200-106632600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr12:106621400-106632600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr12:106621400-106638200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr12:106621600-106631400	Weak transcription	Adipose Nuclei	Adipose
9	chr12:106621600-106631800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr12:106621600-106632600	Weak transcription	Colonic Mucosa	Colon
11	chr12:106621600-106632800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr12:106621800-106631800	Weak transcription	Gastric	stomach
13	chr12:106621800-106631800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr12:106621800-106632800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr12:106622000-106632200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr12:106622200-106632000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr12:106622200-106639000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr12:106622200-106639600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr12:106622400-106632200	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr12:106622400-106632800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr12:106624400-106633000	Weak transcription	Aorta	Aorta
22	chr12:106625000-106631800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr12:106625200-106631800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr12:106625200-106631800	Weak transcription	Placenta	Placenta
25	chr12:106625200-106632600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr12:106625200-106636800	Weak transcription	Right Atrium	heart
27	chr12:106625200-106640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr12:106625400-106632600	Weak transcription	Right Ventricle	heart
29	chr12:106625400-106632600	Weak transcription	HepG2	liver
30	chr12:106625600-106632600	Weak transcription	Brain Substantia Nigra	brain
31	chr12:106626600-106631800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr12:106627000-106633000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr12:106627200-106631400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr12:106627400-106631800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr12:106627400-106632000	Weak transcription	Fetal Intestine Large	intestine
36	chr12:106627400-106632000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr12:106627600-106632600	Weak transcription	Brain Angular Gyrus	brain
38	chr12:106627600-106634400	Strong transcription	Fetal Brain Female	brain
39	chr12:106627800-106631400	Weak transcription	HUVEC	blood vessel
40	chr12:106627800-106631800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr12:106627800-106632000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr12:106628000-106632000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr12:106628200-106631400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr12:106628200-106632200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
45	chr12:106628200-106632600	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr12:106628400-106632200	Weak transcription	GM12878-XiMat	blood
47	chr12:106628600-106632000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr12:106628600-106632000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr12:106628600-106632600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr12:106628600-106638600	Weak transcription	Fetal Brain Male	brain

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