Variant report

Variant	rs351366
Chromosome Location	chr1:113049651-113049652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr1:113049232-113049922	HEK293-T-REx	kidney:	n/a	chr1:113049234-113049243 chr1:113049589-113049610

No.	Distal block	Cell Line	Cell type
1	chr1:113042549..113044879-chr1:113047286..113049813,2	MCF-7	breast:
2	chr1:113048065..113050562-chr1:113256191..113259414,3	MCF-7	breast:
3	chr1:113044387..113046932-chr1:113047303..113049835,3	K562	blood:

Variant related genes	Relation type
WNT2B	TF binding region
ENSG00000155367	Chromatin interaction
ENSG00000261595	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12722725	1.00[ASN][1000 genomes]
rs12722910	1.00[ASN][1000 genomes]
rs12724682	1.00[ASN][1000 genomes]
rs12727145	1.00[ASN][1000 genomes]
rs12729635	1.00[ASN][1000 genomes]
rs12736457	1.00[ASN][1000 genomes]
rs12737053	1.00[ASN][1000 genomes]
rs34611728	1.00[ASN][1000 genomes]
rs34731458	1.00[ASN][1000 genomes]
rs34961977	1.00[ASN][1000 genomes]
rs34989396	1.00[ASN][1000 genomes]
rs35119735	1.00[ASN][1000 genomes]
rs35735679	1.00[ASN][1000 genomes]
rs35947845	1.00[ASN][1000 genomes]
rs35995150	1.00[ASN][1000 genomes]
rs36087180	1.00[ASN][1000 genomes]
rs61818824	1.00[ASN][1000 genomes]
rs61818825	1.00[ASN][1000 genomes]
rs61818828	1.00[ASN][1000 genomes]
rs6688050	1.00[ASN][1000 genomes]
rs71644398	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13370	chr1:112693290-113246263	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1002971	chr1:112924725-113740584	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
3	nsv535059	chr1:112924725-113740584	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
4	nsv831081	chr1:112934920-113122640	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1008375	chr1:113028271-113060221	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1009068	chr1:113048992-113057407	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:113045000-113050600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:113045000-113050600	Weak transcription	Spleen	Spleen
3	chr1:113045200-113050400	Weak transcription	Lung	lung
4	chr1:113045200-113050400	Enhancers	Ovary	ovary
5	chr1:113045400-113050400	Weak transcription	A549	lung
6	chr1:113045400-113050600	Bivalent Enhancer	Fetal Stomach	stomach
7	chr1:113045600-113050600	Weak transcription	Esophagus	oesophagus
8	chr1:113045600-113050600	Weak transcription	Gastric	stomach
9	chr1:113047600-113049800	Enhancers	Primary B cells from peripheral blood	blood
10	chr1:113048000-113050400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr1:113048200-113050400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:113048800-113050200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:113049400-113050000	Weak transcription	Hela-S3	cervix
14	chr1:113049400-113050400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:113049600-113049800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr1:113049600-113049800	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr1:113049600-113049800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
18	chr1:113049600-113050000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
19	chr1:113049600-113050200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
20	chr1:113049600-113050200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
21	chr1:113049600-113050200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
22	chr1:113049600-113050200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
23	chr1:113049600-113050400	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr1:113049600-113050600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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