Variant report

Variant	rs35137197
Chromosome Location	chr17:37381851-37381852
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37352643..37354181-chr17:37381799..37383707,2	K562	blood:
2	chr17:37355062..37368949-chr17:37377464..37389224,25	K562	blood:
3	chr17:37355062..37357576-chr17:37380134..37382908,2	K562	blood:

Variant related genes	Relation type
ENSG00000067191	Chromatin interaction
ENSG00000108298	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16968682	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35421081	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35996049	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv833441	chr17:37320807-37476796	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv908203	chr17:37327165-37405657	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv1061084	chr17:37333956-37501598	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
7	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
8	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
9	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
10	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
11	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37380200-37382400	Bivalent Enhancer	Fetal Brain Male	brain
2	chr17:37380400-37382000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
3	chr17:37380400-37382000	Bivalent Enhancer	Spleen	Spleen
4	chr17:37380400-37382200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr17:37380400-37382400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr17:37380400-37382400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr17:37380400-37382400	Active TSS	Brain Anterior Caudate	brain
8	chr17:37380400-37382600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr17:37380600-37382400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr17:37380600-37382400	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr17:37380600-37382600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
12	chr17:37380600-37382800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr17:37380800-37382000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
14	chr17:37380800-37382200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr17:37380800-37382200	Active TSS	Brain Angular Gyrus	brain
16	chr17:37380800-37382400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr17:37380800-37382400	Bivalent Enhancer	Fetal Thymus	thymus
18	chr17:37381000-37382000	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr17:37381000-37382000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
20	chr17:37381000-37382000	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
21	chr17:37381000-37382000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
22	chr17:37381000-37382000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr17:37381000-37382000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr17:37381000-37382000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr17:37381000-37382200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
26	chr17:37381000-37382400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr17:37381000-37382400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
28	chr17:37381000-37382400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr17:37381000-37382400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr17:37381000-37382400	Enhancers	Liver	Liver
31	chr17:37381000-37382400	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr17:37381000-37382400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
33	chr17:37381000-37382600	Enhancers	Lung	lung
34	chr17:37381000-37382800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
35	chr17:37381000-37382800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr17:37381200-37382000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr17:37381200-37382000	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
38	chr17:37381200-37382000	Bivalent Enhancer	Fetal Lung	lung
39	chr17:37381200-37382400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
40	chr17:37381200-37382400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:37381200-37382400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr17:37381200-37382400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr17:37381200-37382400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
44	chr17:37381200-37382400	Bivalent/Poised TSS	Fetal Stomach	stomach
45	chr17:37381200-37382400	Bivalent/Poised TSS	HepG2	liver
46	chr17:37381200-37382400	Bivalent/Poised TSS	Osteobl	bone
47	chr17:37381200-37382800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
48	chr17:37381200-37382800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr17:37381400-37382000	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
50	chr17:37381400-37382000	Flanking Active TSS	Right Ventricle	heart

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