Variant report

Variant	rs35137531
Chromosome Location	chr2:190532159-190532160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190529439..190532405-chr2:190545827..190547782,2	MCF-7	breast:
2	chr2:190525922..190529074-chr2:190530082..190533259,4	K562	blood:

Variant related genes	Relation type
ENSG00000138381	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16832002	1.00[AMR][1000 genomes]
rs56244248	1.00[AMR][1000 genomes]
rs57236641	1.00[AMR][1000 genomes]
rs5742980	1.00[AMR][1000 genomes]
rs5743012	1.00[AMR][1000 genomes]
rs5743046	1.00[AMR][1000 genomes]
rs5743069	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190527000-190534800	Weak transcription	Lung	lung
2	chr2:190527400-190532200	Weak transcription	Left Ventricle	heart
3	chr2:190527400-190533000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:190527400-190533600	Weak transcription	K562	blood
5	chr2:190527400-190537400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:190527400-190538400	Weak transcription	Pancreas	Pancrea
7	chr2:190527400-190538400	Weak transcription	Right Ventricle	heart
8	chr2:190527400-190538600	Weak transcription	Esophagus	oesophagus
9	chr2:190527400-190538600	Weak transcription	Gastric	stomach
10	chr2:190527400-190539000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:190527600-190532600	Weak transcription	Colonic Mucosa	Colon
12	chr2:190527600-190532600	Weak transcription	Fetal Intestine Small	intestine
13	chr2:190527600-190532800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:190527600-190538600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:190527600-190538600	Weak transcription	Spleen	Spleen
16	chr2:190527600-190539200	Weak transcription	Small Intestine	intestine
17	chr2:190527800-190532200	Weak transcription	NHEK	skin
18	chr2:190527800-190532800	Weak transcription	Brain Substantia Nigra	brain
19	chr2:190527800-190533000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:190527800-190538400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:190527800-190538400	Weak transcription	Psoas Muscle	Psoas
22	chr2:190527800-190538600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr2:190528200-190537600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:190528200-190541600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:190528400-190532600	Weak transcription	Fetal Brain Male	brain
26	chr2:190528400-190536000	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr2:190528400-190537400	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr2:190528600-190532200	Weak transcription	Fetal Stomach	stomach
29	chr2:190528600-190538000	Weak transcription	Fetal Heart	heart
30	chr2:190528600-190539600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:190528800-190537000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr2:190529000-190536000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr2:190529000-190537000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr2:190529000-190537200	Strong transcription	Placenta	Placenta
35	chr2:190529000-190537800	Strong transcription	HSMM	muscle
36	chr2:190529200-190537200	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr2:190529400-190535000	Strong transcription	Primary hematopoietic stem cells	blood
38	chr2:190529400-190537200	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr2:190529600-190537000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr2:190529600-190537200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr2:190529800-190532400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr2:190529800-190533600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr2:190529800-190534400	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr2:190529800-190534600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr2:190529800-190537200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr2:190529800-190537200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:190529800-190537200	Strong transcription	Fetal Intestine Large	intestine
48	chr2:190529800-190537600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr2:190530000-190533400	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr2:190530000-190534400	Strong transcription	NHDF-Ad	bronchial

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