Variant report

Variant	rs35138137
Chromosome Location	chr3:60032384-60032385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11711227	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11718994	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13062399	0.84[EUR][1000 genomes]
rs13088111	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs212045	0.84[EUR][1000 genomes]
rs34476175	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3845972	0.97[ASN][1000 genomes]
rs4083381	0.88[ASN][1000 genomes]
rs62238444	0.82[EUR][1000 genomes]
rs9311746	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv876839	chr3:60024084-60039488	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60026600-60033600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr3:60030600-60034000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:60031400-60033800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:60031600-60032400	Active TSS	Brain Angular Gyrus	brain
5	chr3:60031600-60032400	Active TSS	Brain Cingulate Gyrus	brain
6	chr3:60031600-60032400	Active TSS	Brain Hippocampus Middle	brain
7	chr3:60031600-60032600	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr3:60031600-60033600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:60031600-60033600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr3:60031600-60033600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:60031600-60035200	Enhancers	Fetal Thymus	thymus
12	chr3:60031800-60032400	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr3:60031800-60032400	Active TSS	Brain Substantia Nigra	brain
14	chr3:60031800-60032800	Weak transcription	Primary T cells from cord blood	blood
15	chr3:60031800-60033000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:60032000-60033200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr3:60032000-60034200	Enhancers	Thymus	Thymus
18	chr3:60032200-60032400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr3:60032200-60032400	Enhancers	Brain Germinal Matrix	brain
20	chr3:60032200-60032800	Weak transcription	Dnd41	blood
21	chr3:60032200-60033200	Weak transcription	Primary T cells fromperipheralblood	blood

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