Variant report

Variant	rs35139498
Chromosome Location	chr7:26385024-26385025
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26384575..26386800-chr7:26402613..26404629,2	MCF-7	breast:
2	chr7:26330677..26332957-chr7:26384822..26387116,2	MCF-7	breast:
3	chr7:26240262..26243244-chr7:26384656..26387797,3	MCF-7	breast:
4	chr7:26228171..26230631-chr7:26384703..26386781,2	K562	blood:

Variant related genes	Relation type
ENSG00000086300	Chromatin interaction
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12534835	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12673873	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13242213	0.87[ASN][1000 genomes]
rs2014728	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv2761313	chr7:26340970-26389772	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26335200-26386400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:26345600-26386200	Weak transcription	Thymus	Thymus
3	chr7:26361800-26385400	Weak transcription	Pancreas	Pancrea
4	chr7:26368800-26405000	Weak transcription	Placenta	Placenta
5	chr7:26372400-26405200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:26374400-26386200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:26374800-26386200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr7:26375000-26414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:26375200-26386200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:26376400-26385800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:26376600-26385200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr7:26377400-26385600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:26377600-26386000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:26377800-26386200	Weak transcription	GM12878-XiMat	blood
15	chr7:26379000-26386200	Weak transcription	Fetal Intestine Small	intestine
16	chr7:26380400-26386000	Weak transcription	Primary T cells from cord blood	blood
17	chr7:26381000-26386200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:26382000-26386600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:26382400-26386200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr7:26382400-26386200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:26382600-26387000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr7:26382600-26388000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr7:26382600-26392000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:26382600-26393400	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr7:26382800-26392800	Strong transcription	Primary B cells from cord blood	blood
26	chr7:26383600-26385800	Weak transcription	Dnd41	blood
27	chr7:26384000-26385600	Weak transcription	Lung	lung
28	chr7:26384000-26387600	Enhancers	Liver	Liver
29	chr7:26384000-26389400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr7:26384400-26385200	Genic enhancers	Primary B cells from peripheral blood	blood
31	chr7:26384400-26385600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:26384400-26386200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:26384400-26386200	Weak transcription	Adipose Nuclei	Adipose
34	chr7:26384600-26385200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr7:26384600-26386400	Weak transcription	Brain Angular Gyrus	brain
36	chr7:26384600-26389000	Enhancers	HepG2	liver
37	chr7:26384600-26391200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr7:26384600-26393000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:26384800-26385200	Enhancers	Fetal Intestine Large	intestine
40	chr7:26384800-26385600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:26384800-26386600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr7:26384800-26388600	Strong transcription	Fetal Thymus	thymus
43	chr7:26384800-26409400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr7:26385000-26385600	Enhancers	Spleen	Spleen
45	chr7:26385000-26386400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:26385000-26386800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr7:26385000-26388200	Weak transcription	Fetal Brain Female	brain
48	chr7:26385000-26388800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr7:26385000-26389600	Weak transcription	Brain Inferior Temporal Lobe	brain

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