Variant report

Variant	rs35139704
Chromosome Location	chr8:98927359-98927360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:98919725..98921829-chr8:98926428..98928167,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12676720	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13248439	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13256241	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2444905	0.80[ASN][1000 genomes]
rs2512069	0.86[EUR][1000 genomes]
rs2513822	0.83[EUR][1000 genomes]
rs2513834	0.83[EUR][1000 genomes]
rs753799	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1028055	chr8:98780445-98977746	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891214	chr8:98849303-98990399	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv891215	chr8:98910287-98980663	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98904000-98927600	Weak transcription	Esophagus	oesophagus
2	chr8:98919200-98927600	Weak transcription	Right Atrium	heart
3	chr8:98922000-98930600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:98923200-98927400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:98923200-98930800	Enhancers	Fetal Muscle Leg	muscle
6	chr8:98924200-98930400	Weak transcription	Fetal Intestine Small	intestine
7	chr8:98924600-98929200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:98924800-98929200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:98925000-98928000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:98925000-98928200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:98925200-98927400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:98925200-98927400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:98925200-98927600	Weak transcription	Ovary	ovary
14	chr8:98925200-98928600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:98925200-98928800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:98925200-98928800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:98925200-98928800	Weak transcription	NH-A	brain
18	chr8:98925200-98928800	Weak transcription	NHDF-Ad	bronchial
19	chr8:98925200-98928800	Weak transcription	Osteobl	bone
20	chr8:98925200-98929000	Weak transcription	NHLF	lung
21	chr8:98925200-98929200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:98925200-98930400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:98925200-98930400	Weak transcription	Left Ventricle	heart
24	chr8:98925400-98927400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr8:98925400-98927600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr8:98925400-98927600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:98925400-98927600	Weak transcription	Brain Anterior Caudate	brain
28	chr8:98925400-98928000	Weak transcription	Fetal Kidney	kidney
29	chr8:98925400-98928800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr8:98925400-98928800	Weak transcription	Fetal Lung	lung
31	chr8:98925400-98929200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr8:98925400-98930600	Weak transcription	Placenta	Placenta
33	chr8:98925400-98933200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:98925400-98933800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:98925600-98927600	Weak transcription	Fetal Stomach	stomach
36	chr8:98925600-98929200	Weak transcription	Colon Smooth Muscle	Colon
37	chr8:98925600-98929200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr8:98926200-98932400	Enhancers	Placenta Amnion	Placenta Amnion
39	chr8:98926800-98929000	Enhancers	Liver	Liver
40	chr8:98927000-98928000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr8:98927000-98928200	Enhancers	Brain Hippocampus Middle	brain
42	chr8:98927000-98928600	Enhancers	Fetal Muscle Trunk	muscle
43	chr8:98927000-98929600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr8:98927200-98928000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr8:98927200-98928200	Enhancers	Brain Substantia Nigra	brain
46	chr8:98927200-98929200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:98927200-98929400	Enhancers	Adipose Nuclei	Adipose
48	chr8:98927200-98929600	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr8:98927200-98930200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:98927200-98931200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links