Variant report

Variant	rs35141759
Chromosome Location	chr7:117131184-117131185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10487372	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs177069	1.00[ASN][1000 genomes]
rs34159932	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34638253	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117124000-117132200	Enhancers	Fetal Intestine Small	intestine
2	chr7:117126800-117151200	Weak transcription	Pancreas	Pancrea
3	chr7:117127400-117132400	Weak transcription	Dnd41	blood
4	chr7:117128800-117131200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr7:117129800-117144600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:117130800-117132400	Weak transcription	Liver	Liver
7	chr7:117130800-117134200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:117131000-117134600	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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