Variant report

Variant	rs35150214
Chromosome Location	chr15:72771648-72771649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:72770834-72771755	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:72769981..72772398-chr15:72784193..72786269,2	MCF-7	breast:
2	chr15:72770833..72775652-chr15:72776654..72780093,7	K562	blood:
3	chr15:72770687..72773581-chr15:72777521..72779996,2	MCF-7	breast:
4	chr15:72770264..72772292-chr15:72776919..72779062,2	K562	blood:

Variant related genes	Relation type
ENSG00000261423	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12904334	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12906942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17823279	1.00[CEU][hapmap]
rs34083902	1.00[ASN][1000 genomes]
rs35263304	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35592085	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35712178	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71397249	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72768200-72772800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:72768200-72775400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:72768400-72771800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:72768400-72773800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:72768400-72775200	Weak transcription	Aorta	Aorta
6	chr15:72768400-72776000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:72768400-72785400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:72768400-72793400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:72768800-72772000	Enhancers	Brain Angular Gyrus	brain
10	chr15:72769000-72775400	Weak transcription	Esophagus	oesophagus
11	chr15:72769000-72775400	Weak transcription	Pancreas	Pancrea
12	chr15:72769000-72775600	Weak transcription	Colonic Mucosa	Colon
13	chr15:72769200-72772000	Enhancers	Stomach Smooth Muscle	stomach
14	chr15:72769200-72774200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:72769200-72777600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:72769200-72778600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:72769200-72779200	Weak transcription	NHLF	lung
18	chr15:72769200-72792000	Weak transcription	Fetal Kidney	kidney
19	chr15:72769400-72772000	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:72769400-72773600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr15:72769600-72772200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:72769600-72772800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:72769600-72773400	Weak transcription	Small Intestine	intestine
24	chr15:72769600-72773800	Weak transcription	Right Atrium	heart
25	chr15:72769600-72775800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:72769600-72777600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:72769600-72779600	Weak transcription	Stomach Mucosa	stomach
28	chr15:72769600-72779600	Weak transcription	HSMMtube	muscle
29	chr15:72769600-72797000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr15:72769600-72832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:72769800-72771800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr15:72769800-72772600	Weak transcription	Fetal Brain Male	brain
33	chr15:72769800-72773200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:72769800-72773800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr15:72769800-72774000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr15:72769800-72774600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr15:72769800-72775400	Weak transcription	HUVEC	blood vessel
38	chr15:72769800-72782800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:72769800-72805200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr15:72770000-72773400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr15:72770000-72774000	Strong transcription	Fetal Stomach	stomach
42	chr15:72770000-72778400	Weak transcription	NH-A	brain
43	chr15:72770000-72786600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:72770200-72772000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:72770200-72772000	Strong transcription	Placenta	Placenta
46	chr15:72770200-72772200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:72770200-72773000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:72770200-72773800	Strong transcription	Fetal Muscle Leg	muscle
49	chr15:72770200-72775000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr15:72770200-72788600	Weak transcription	Brain Germinal Matrix	brain

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