Variant report

Variant	rs35158242
Chromosome Location	chr6:24875061-24875062
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10946732	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946735	0.82[EUR][1000 genomes]
rs12110774	0.84[EUR][1000 genomes]
rs12111413	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192978	1.00[ASN][1000 genomes]
rs13211772	1.00[ASN][1000 genomes]
rs13215106	1.00[ASN][1000 genomes]
rs13220782	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889761	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17671350	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207400	1.00[ASN][1000 genomes]
rs2207401	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2747678	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2747679	1.00[ASN][1000 genomes]
rs28385634	0.84[EUR][1000 genomes]
rs35250553	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35953835	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55697625	1.00[AFR][1000 genomes]
rs61595405	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456637	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914915	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918387	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918511	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71555168	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72839911	1.00[AFR][1000 genomes]
rs7760221	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24843800-24879400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:24847000-24876600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:24855200-24895000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:24856200-24876400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:24856200-24882400	Weak transcription	NHLF	lung
6	chr6:24856400-24877200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:24858600-24876000	Weak transcription	Right Ventricle	heart
8	chr6:24858800-24876600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:24859200-24877000	Weak transcription	Gastric	stomach
10	chr6:24859200-24877000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:24859200-24877200	Weak transcription	Lung	lung
12	chr6:24859400-24886800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:24860400-24876600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:24861200-24877000	Weak transcription	Psoas Muscle	Psoas
15	chr6:24861400-24876800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr6:24861600-24875400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:24861600-24877000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr6:24862800-24876000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:24862800-24877000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:24862800-24885600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr6:24862800-24887400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
22	chr6:24863000-24876600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:24863800-24875800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:24863800-24876400	Strong transcription	Fetal Thymus	thymus
25	chr6:24864000-24877200	Weak transcription	Fetal Stomach	stomach
26	chr6:24864400-24877000	Strong transcription	Primary hematopoietic stem cells	blood
27	chr6:24865600-24876000	Weak transcription	Left Ventricle	heart
28	chr6:24865600-24877000	Strong transcription	Primary B cells from cord blood	blood
29	chr6:24865600-24879600	Weak transcription	Brain Germinal Matrix	brain
30	chr6:24865800-24877000	Weak transcription	Liver	Liver
31	chr6:24867600-24876200	Strong transcription	GM12878-XiMat	blood
32	chr6:24869000-24878000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:24869400-24875400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr6:24869400-24876800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:24870000-24875400	Strong transcription	NHDF-Ad	bronchial
36	chr6:24870400-24875200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:24870400-24878200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr6:24870400-24883800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr6:24870800-24876200	Strong transcription	HSMMtube	muscle
40	chr6:24870800-24876600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:24870800-24877000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:24870800-24877200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:24871400-24876600	Strong transcription	Thymus	Thymus
44	chr6:24871800-24876000	Strong transcription	Spleen	Spleen
45	chr6:24871800-24886800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr6:24872000-24877400	Strong transcription	Dnd41	blood
47	chr6:24872400-24876000	Enhancers	Placenta Amnion	Placenta Amnion
48	chr6:24872600-24877200	Weak transcription	Esophagus	oesophagus
49	chr6:24872800-24876200	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:24873000-24875200	Strong transcription	Fetal Muscle Leg	muscle

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