Variant report

Variant	rs35160861
Chromosome Location	chr2:173255059-173255060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12996569	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13005010	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13011908	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17220266	1.00[EUR][1000 genomes]
rs2884228	0.81[EUR][1000 genomes]
rs36091681	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722935	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6727015	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71415297	0.93[ASN][1000 genomes]
rs7597542	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173239200-173260200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173246200-173258400	Weak transcription	Fetal Muscle Leg	muscle
3	chr2:173246200-173260200	Weak transcription	Right Atrium	heart
4	chr2:173247000-173258200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr2:173249800-173262600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:173250200-173260400	Weak transcription	Thymus	Thymus
7	chr2:173252200-173261400	Weak transcription	Fetal Lung	lung
8	chr2:173252400-173256200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:173252600-173256400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:173253600-173262000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:173253800-173255600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:173254200-173255600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr2:173254400-173255800	Enhancers	Fetal Intestine Large	intestine
14	chr2:173254400-173256000	Enhancers	Fetal Intestine Small	intestine
15	chr2:173254400-173261400	Enhancers	Primary hematopoietic stem cells	blood
16	chr2:173254600-173255200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:173254600-173255600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr2:173254600-173256200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr2:173254800-173255600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr2:173254800-173256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:173254800-173258400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr2:173254800-173258400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr2:173254800-173258600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr2:173254800-173260400	Weak transcription	Left Ventricle	heart
25	chr2:173254800-173261600	Weak transcription	Lung	lung
26	chr2:173255000-173255200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr2:173255000-173258200	Weak transcription	Adipose Nuclei	Adipose
28	chr2:173255000-173258400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr2:173255000-173260200	Weak transcription	Fetal Thymus	thymus
30	chr2:173255000-173260200	Weak transcription	Spleen	Spleen

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