Variant report

Variant	rs35161334
Chromosome Location	chr3:87989142-87989143
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12219361	0.83[AMR][1000 genomes]
rs2393289	0.80[AMR][1000 genomes]
rs2393290	0.80[AMR][1000 genomes]
rs2393292	0.80[AMR][1000 genomes]
rs2393293	0.80[AMR][1000 genomes]
rs2393294	0.80[AMR][1000 genomes]
rs2393295	0.80[AMR][1000 genomes]
rs2393298	0.80[AMR][1000 genomes]
rs2393299	0.80[AMR][1000 genomes]
rs2393300	0.80[AMR][1000 genomes]
rs2393301	0.80[AMR][1000 genomes]
rs4272723	0.82[AMR][1000 genomes]
rs4272724	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4391752	0.82[AMR][1000 genomes]
rs4397760	0.82[AMR][1000 genomes]
rs4562731	0.80[AMR][1000 genomes]
rs4567374	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4570510	0.82[AMR][1000 genomes]
rs7083549	0.80[AMR][1000 genomes]
rs7095406	0.80[AMR][1000 genomes]
rs7095419	0.80[AMR][1000 genomes]
rs7901062	0.82[AMR][1000 genomes]
rs7906987	0.80[AMR][1000 genomes]
rs7907086	0.80[AMR][1000 genomes]
rs7908761	0.94[EUR][1000 genomes]
rs7909796	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1007981	chr3:87949316-88004036	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv527929	chr3:87949733-88003812	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87982800-87991400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:87984600-87989200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:87988400-87989600	Weak transcription	Primary hematopoietic stem cells	blood

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