Variant report

Variant	rs35162199
Chromosome Location	chr6:100795280-100795281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100792831..100794448-chr6:100794579..100796890,2	K562	blood:
2	chr6:100794556..100797459-chr6:100798759..100800512,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1395118	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1553585	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100790800-100796800	Enhancers	HSMM	muscle
2	chr6:100790800-100796800	Enhancers	NH-A	brain
3	chr6:100792000-100795800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:100792200-100795800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:100792400-100796200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:100794000-100796000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:100794000-100796000	Enhancers	NHEK	skin
8	chr6:100794000-100796400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:100794000-100796600	Enhancers	HMEC	breast
10	chr6:100794600-100796200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:100794800-100795800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:100794800-100795800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:100794800-100795800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:100794800-100796600	Weak transcription	NHLF	lung
15	chr6:100794800-100796800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:100794800-100797000	Flanking Active TSS	Dnd41	blood
17	chr6:100794800-100797000	Enhancers	Osteobl	bone
18	chr6:100795000-100795600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:100795000-100795800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:100795000-100795800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:100795000-100795800	Weak transcription	HSMMtube	muscle
22	chr6:100795000-100796000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:100795000-100796000	Enhancers	HUVEC	blood vessel
24	chr6:100795000-100797800	Enhancers	NHDF-Ad	bronchial
25	chr6:100795200-100795800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:100795200-100796400	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links