Variant report

Variant	rs35162541
Chromosome Location	chr14:69257119-69257120
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69255899..69258474-chr14:102604713..102607022,2	MCF-7	breast:
2	chr14:69090615..69103406-chr14:69249821..69264188,29	MCF-7	breast:
3	chr14:69128588..69133050-chr14:69253079..69257196,5	MCF-7	breast:
4	chr14:68351021..68355555-chr14:69252888..69257229,4	MCF-7	breast:
5	chr14:68930492..68947840-chr14:69251918..69264148,62	MCF-7	breast:
6	chr14:68449018..68450556-chr14:69255778..69257546,2	MCF-7	breast:
7	chr14:69149566..69152941-chr14:69256310..69260478,3	MCF-7	breast:
8	chr14:68282145..68286888-chr14:69256784..69261104,5	MCF-7	breast:
9	chr14:69091753..69104091-chr14:69256141..69263760,20	MCF-7	breast:
10	chr14:68926331..68929151-chr14:69254236..69257263,3	MCF-7	breast:
11	chr14:69056722..69058662-chr14:69255597..69257202,2	MCF-7	breast:
12	chr14:68398959..68401535-chr14:69255427..69257747,2	MCF-7	breast:
13	chr14:68931679..68940045-chr14:69251548..69257130,11	MCF-7	breast:
14	chr12:53297392..53299543-chr14:69255294..69257609,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258623	Chromatin interaction
ENSG00000170421	Chromatin interaction
ENSG00000080824	Chromatin interaction
ENSG00000072121	Chromatin interaction
ENSG00000259038	Chromatin interaction
ENSG00000182185	Chromatin interaction
ENSG00000140153	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17106298	1.00[AFR][1000 genomes]
rs17106303	1.00[AFR][1000 genomes]
rs59309149	1.00[ASN][1000 genomes]
rs73277294	1.00[ASN][1000 genomes]
rs74060136	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69253600-69258600	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:69253600-69258600	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
3	chr14:69253800-69258400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
4	chr14:69253800-69258800	Transcr. at gene 5' and 3'	A549	lung
5	chr14:69253800-69258800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
6	chr14:69253800-69259800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
7	chr14:69254000-69258000	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
8	chr14:69254000-69258200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:69254000-69258800	Transcr. at gene 5' and 3'	NHLF	lung
10	chr14:69254000-69259600	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
11	chr14:69254200-69258400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
12	chr14:69254200-69259600	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
13	chr14:69254200-69259600	Transcr. at gene 5' and 3'	Fetal Lung	lung
14	chr14:69254200-69259800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:69254600-69257200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:69255000-69257800	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:69255000-69257800	Transcr. at gene 5' and 3'	HUVEC	blood vessel
18	chr14:69255000-69258400	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
19	chr14:69255000-69258400	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
20	chr14:69255000-69258400	Transcr. at gene 5' and 3'	HMEC	breast
21	chr14:69255000-69258600	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
22	chr14:69255000-69258600	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
23	chr14:69255000-69258600	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
24	chr14:69255000-69258800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:69255000-69258800	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
26	chr14:69255000-69259200	Transcr. at gene 5' and 3'	HSMM	muscle
27	chr14:69255000-69259600	Transcr. at gene 5' and 3'	Rectal Smooth Muscle	rectum
28	chr14:69255000-69259800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:69255000-69260400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
30	chr14:69255000-69262400	Active TSS	Right Atrium	heart
31	chr14:69255200-69257400	Transcr. at gene 5' and 3'	Cortex derived primary cultured neurospheres	brain
32	chr14:69255200-69257400	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
33	chr14:69255200-69257600	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:69255200-69257600	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
35	chr14:69255200-69257600	Genic enhancers	Dnd41	blood
36	chr14:69255200-69257800	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
37	chr14:69255200-69257800	Transcr. at gene 5' and 3'	Osteobl	bone
38	chr14:69255200-69258000	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:69255200-69258000	Transcr. at gene 5' and 3'	Liver	Liver
40	chr14:69255200-69258200	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:69255200-69258600	Transcr. at gene 5' and 3'	Colon Smooth Muscle	Colon
42	chr14:69255200-69258600	Transcr. at gene 5' and 3'	Placenta	Placenta
43	chr14:69255200-69258800	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
44	chr14:69255200-69259000	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:69255200-69259400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
46	chr14:69255400-69257800	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
47	chr14:69255400-69257800	Transcr. at gene 5' and 3'	Sigmoid Colon	Sigmoid Colon
48	chr14:69255400-69258400	Transcr. at gene 5' and 3'	Left Ventricle	heart
49	chr14:69255400-69259000	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
50	chr14:69255400-69259400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin

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