Variant report

Variant	rs35163659
Chromosome Location	chr15:74691804-74691805
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74691243..74694304-chr15:74694483..74697655,3	MCF-7	breast:
2	chr15:74689719..74694435-chr15:74706184..74713253,9	MCF-7	breast:
3	chr15:74673950..74692681-chr15:74720825..74732493,46	MCF-7	breast:
4	chr15:74681754..74686818-chr15:74686850..74691835,9	K562	blood:
5	chr15:74689088..74692233-chr15:74725109..74727795,5	MCF-7	breast:
6	chr15:74674020..74678319-chr15:74686843..74691927,9	MCF-7	breast:
7	chr15:74690543..74693238-chr15:74721737..74723787,2	MCF-7	breast:
8	chr15:74687793..74691115-chr15:74691233..74693928,3	MCF-7	breast:
9	chr15:74688657..74691908-chr15:74695060..74698552,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138623	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12441582	0.80[AFR][1000 genomes]
rs28362930	0.84[AMR][1000 genomes]
rs5015024	0.84[AMR][1000 genomes]
rs7175229	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74675800-74695800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr15:74681600-74695600	Enhancers	Primary B cells from peripheral blood	blood
3	chr15:74685000-74695000	Enhancers	HSMM	muscle
4	chr15:74685000-74695400	Weak transcription	Fetal Lung	lung
5	chr15:74685400-74694400	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:74685400-74699400	Weak transcription	Brain Substantia Nigra	brain
7	chr15:74685800-74694600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:74685800-74694800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:74686600-74694400	Enhancers	Osteobl	bone
10	chr15:74686800-74695200	Enhancers	Primary B cells from cord blood	blood
11	chr15:74687400-74692200	Enhancers	Thymus	Thymus
12	chr15:74687400-74694200	Enhancers	HMEC	breast
13	chr15:74687400-74696200	Enhancers	NH-A	brain
14	chr15:74687800-74694000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:74688000-74692000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:74688000-74696800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr15:74688000-74699000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:74688200-74692000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr15:74688200-74694800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:74688200-74695200	Weak transcription	Right Atrium	heart
21	chr15:74688600-74695000	Enhancers	Primary hematopoietic stem cells	blood
22	chr15:74688800-74692000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:74688800-74697000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr15:74689200-74692000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr15:74689200-74692000	Enhancers	Dnd41	blood
26	chr15:74689200-74692200	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr15:74689200-74692400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:74689200-74693400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:74689200-74693600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr15:74689200-74693800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:74689400-74692000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:74689400-74692000	Enhancers	NHEK	skin
33	chr15:74689400-74692200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:74689400-74702400	Weak transcription	Gastric	stomach
35	chr15:74689600-74692200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr15:74689600-74692200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:74689600-74698000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:74689800-74692000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:74689800-74692000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:74689800-74693200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr15:74689800-74694800	Enhancers	Muscle Satellite Cultured Cells	--
42	chr15:74690000-74692000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:74690200-74692000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:74690200-74692000	Weak transcription	Lung	lung
45	chr15:74690200-74692200	Weak transcription	Hela-S3	cervix
46	chr15:74690200-74692400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr15:74690400-74693400	Weak transcription	Stomach Mucosa	stomach
48	chr15:74690600-74692000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr15:74690600-74692000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr15:74690600-74692000	Weak transcription	Fetal Muscle Trunk	muscle

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