Variant report

Variant	rs35171718
Chromosome Location	chr9:108418995-108418996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108416993..108419153-chr9:108454658..108457583,2	K562	blood:
2	chr9:108418364..108420760-chr9:108424450..108426444,2	K562	blood:
3	chr9:108418532..108421730-chr9:108444184..108446656,3	K562	blood:
4	chr9:108417392..108420233-chr9:108424521..108426938,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAL2-1	chr9:108418650-108420264	NONHSAT133825

Variant related genes	Relation type
ENSG00000186051	Chromatin interaction
ENSG00000095209	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13299856	0.86[EUR][1000 genomes]
rs16924823	0.85[EUR][1000 genomes]
rs35073359	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35273195	0.86[EUR][1000 genomes]
rs36016420	0.86[EUR][1000 genomes]
rs9696805	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108418000-108419200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr9:108418000-108419200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr9:108418000-108419200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr9:108418000-108419200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr9:108418000-108419200	Active TSS	Fetal Brain Female	brain
6	chr9:108418000-108419200	Active TSS	A549	lung
7	chr9:108418000-108419400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr9:108418200-108419000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
9	chr9:108418200-108419000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:108418200-108419000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:108418200-108419000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
12	chr9:108418200-108419000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:108418200-108419000	Active TSS	Brain Anterior Caudate	brain
14	chr9:108418200-108419000	Active TSS	Brain Cingulate Gyrus	brain
15	chr9:108418200-108419000	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr9:108418200-108419000	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr9:108418200-108419000	Active TSS	Rectal Smooth Muscle	rectum
18	chr9:108418200-108419000	Active TSS	Right Atrium	heart
19	chr9:108418200-108419000	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr9:108418200-108419000	Active TSS	GM12878-XiMat	blood
21	chr9:108418200-108419000	Bivalent/Poised TSS	NH-A	brain
22	chr9:108418200-108419200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr9:108418200-108419200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:108418200-108419200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr9:108418200-108419200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:108418200-108419200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
27	chr9:108418200-108419200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:108418200-108419200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:108418200-108419200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:108418200-108419200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:108418200-108419200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr9:108418200-108419200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:108418200-108419200	Active TSS	Brain Hippocampus Middle	brain
34	chr9:108418200-108419200	Flanking Active TSS	Colonic Mucosa	Colon
35	chr9:108418200-108419200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
36	chr9:108418200-108419200	Active TSS	Fetal Kidney	kidney
37	chr9:108418200-108419200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
38	chr9:108418200-108419200	Active TSS	Right Ventricle	heart
39	chr9:108418200-108419200	Bivalent Enhancer	Small Intestine	intestine
40	chr9:108418200-108419400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
41	chr9:108418200-108419400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr9:108418200-108419400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
43	chr9:108418200-108419400	Enhancers	Spleen	Spleen
44	chr9:108418400-108419000	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr9:108418400-108419000	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr9:108418400-108419000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr9:108418400-108419000	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr9:108418400-108419000	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:108418400-108419000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr9:108418400-108419000	Bivalent/Poised TSS	Fetal Intestine Small	intestine

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