Variant report

Variant	rs35173057
Chromosome Location	chr12:123210757-123210758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:123210591..123212657-chr12:123213454..123215681,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HCAR3-1	chr12:123210623-123211051	ENSG00000270134.1

Variant related genes	Relation type
ENSG00000196917	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10773515	0.86[ASN][1000 genomes]
rs10773516	0.92[ASN][1000 genomes]
rs10847570	0.92[ASN][1000 genomes]
rs10847574	0.92[ASN][1000 genomes]
rs11059504	0.81[ASN][1000 genomes]
rs11059507	0.81[ASN][1000 genomes]
rs11059583	0.92[ASN][1000 genomes]
rs12297225	1.00[AMR][1000 genomes]
rs55776099	0.89[ASN][1000 genomes]
rs61955029	0.81[ASN][1000 genomes]
rs6489237	0.92[ASN][1000 genomes]
rs7131790	0.85[ASN][1000 genomes]
rs7131791	0.85[ASN][1000 genomes]
rs7307192	0.85[ASN][1000 genomes]
rs7313367	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348872	chr12:123192296-123213461	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123201200-123214600	Weak transcription	Spleen	Spleen
2	chr12:123205200-123214600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr12:123207400-123214200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:123207800-123214800	Weak transcription	Brain Anterior Caudate	brain
5	chr12:123208200-123214200	Weak transcription	Fetal Thymus	thymus
6	chr12:123208200-123215200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr12:123208200-123217000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:123209000-123211200	Enhancers	Primary B cells from peripheral blood	blood
9	chr12:123209400-123211200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr12:123209400-123211800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:123209600-123211000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:123209600-123211200	Flanking Active TSS	GM12878-XiMat	blood
13	chr12:123209600-123211200	Enhancers	HUVEC	blood vessel
14	chr12:123209600-123212000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr12:123209600-123212000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr12:123209600-123213000	Enhancers	HepG2	liver
17	chr12:123209600-123213800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr12:123209800-123211200	Enhancers	Hela-S3	cervix
19	chr12:123210000-123211200	Enhancers	Fetal Intestine Large	intestine
20	chr12:123210000-123211200	Enhancers	Fetal Intestine Small	intestine
21	chr12:123210000-123211800	Enhancers	Primary B cells from cord blood	blood
22	chr12:123210200-123211000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr12:123210200-123211200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr12:123210200-123211200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr12:123210200-123211200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr12:123210200-123211200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr12:123210200-123211200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr12:123210200-123214800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr12:123210400-123210800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr12:123210400-123211000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr12:123210400-123211000	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr12:123210400-123211000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr12:123210400-123211000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr12:123210400-123211000	Enhancers	K562	blood
35	chr12:123210400-123211000	Enhancers	NH-A	brain
36	chr12:123210400-123211200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr12:123210400-123211200	Enhancers	Primary T cells from cord blood	blood
38	chr12:123210400-123211200	Flanking Active TSS	Primary hematopoietic stem cells	blood
39	chr12:123210400-123211200	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr12:123210400-123211200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr12:123210400-123211200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr12:123210400-123211200	Enhancers	Stomach Mucosa	stomach
43	chr12:123210400-123211200	Flanking Active TSS	NHEK	skin
44	chr12:123210400-123211400	Enhancers	Placenta	Placenta
45	chr12:123210600-123210800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr12:123210600-123210800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr12:123210600-123210800	Enhancers	HMEC	breast
48	chr12:123210600-123211000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr12:123210600-123211000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr12:123210600-123211000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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