Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12988428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12988648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12989474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12993284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12996619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12997113	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13005787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13015411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13020911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13027280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13030060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34173247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34210024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34382912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34628265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34807931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35241611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35520781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35887391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6725710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6761302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71420755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71420759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210364600-210387600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:210364600-210392200	Weak transcription	Pancreas	Pancrea
3	chr2:210366600-210387800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210371400-210391000	Weak transcription	Aorta	Aorta
5	chr2:210378800-210385800	Weak transcription	Fetal Brain Male	brain
6	chr2:210378800-210390200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:210382200-210391600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:210383000-210391000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:210383200-210386200	Enhancers	Brain Germinal Matrix	brain
10	chr2:210383800-210384400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr2:210384000-210384400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr2:210384000-210385200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:210384000-210385600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr2:210384000-210386000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
15	chr2:210384000-210386000	Enhancers	Fetal Brain Female	brain
16	chr2:210384000-210386600	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr2:210384000-210388600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:210384200-210384600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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