Variant report

Variant	rs35175708
Chromosome Location	chr2:10515432-10515433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10511279..10513509-chr2:10513925..10515682,2	K562	blood:
2	chr2:10512166..10515814-chr2:10516371..10521287,4	MCF-7	breast:
3	chr2:10505716..10509011-chr2:10514274..10518067,6	MCF-7	breast:
4	chr2:10511165..10512779-chr2:10513925..10515799,2	K562	blood:
5	chr2:10513831..10515502-chr2:10524953..10527688,2	MCF-7	breast:
6	chr2:10503657..10506625-chr2:10513228..10515872,3	K562	blood:
7	chr2:10506679..10509442-chr2:10512559..10516524,3	MCF-7	breast:
8	chr2:10510202..10512560-chr2:10514416..10516370,2	MCF-7	breast:

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10170147	1.00[AMR][1000 genomes]
rs11684521	1.00[AMR][1000 genomes]
rs6760641	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873641	chr2:10480415-10544640	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv873642	chr2:10491985-10532869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10487800-10517800	Weak transcription	Colonic Mucosa	Colon
2	chr2:10487800-10518000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:10489200-10521400	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:10492600-10516000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr2:10493000-10520200	Weak transcription	HMEC	breast
6	chr2:10496400-10515800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:10499200-10523000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:10499800-10517200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:10500400-10518200	Weak transcription	Adipose Nuclei	Adipose
10	chr2:10502800-10515600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:10502800-10519600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:10503200-10519400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:10504200-10515800	Weak transcription	Thymus	Thymus
14	chr2:10508400-10515600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr2:10508400-10517400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:10508600-10519400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:10508600-10521400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr2:10509400-10522800	Weak transcription	Esophagus	oesophagus
19	chr2:10510200-10518800	Weak transcription	Hela-S3	cervix
20	chr2:10510400-10520400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr2:10511200-10520000	Strong transcription	Fetal Intestine Small	intestine
22	chr2:10511200-10520600	Weak transcription	Left Ventricle	heart
23	chr2:10511400-10517200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr2:10511400-10517200	Weak transcription	Fetal Intestine Large	intestine
25	chr2:10512000-10515600	Weak transcription	Fetal Lung	lung
26	chr2:10512600-10519400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr2:10512800-10515600	Weak transcription	Fetal Brain Female	brain
28	chr2:10512800-10520000	Weak transcription	Brain Anterior Caudate	brain
29	chr2:10513000-10515600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr2:10513000-10515800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr2:10513000-10520000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr2:10513000-10521400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr2:10513200-10515600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr2:10513200-10515800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr2:10513200-10517400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr2:10513200-10522400	Enhancers	Primary B cells from peripheral blood	blood
37	chr2:10513400-10516000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr2:10513400-10517400	Weak transcription	Gastric	stomach
39	chr2:10513400-10517600	Weak transcription	Spleen	Spleen
40	chr2:10513400-10517800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr2:10513400-10520400	Weak transcription	Brain Substantia Nigra	brain
42	chr2:10513800-10515600	Weak transcription	NHEK	skin
43	chr2:10513800-10522200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr2:10514000-10517400	Enhancers	Primary B cells from cord blood	blood
45	chr2:10514000-10522000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:10514000-10522000	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr2:10514200-10515800	Weak transcription	HepG2	liver
48	chr2:10514200-10517200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr2:10514200-10520400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr2:10514200-10521200	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links