Variant report

Variant	rs35189772
Chromosome Location	chr15:40730659-40730660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:40728064-40734370	K562	blood:	n/a	n/a
2	POLR2A	chr15:40730497-40732956	K562	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40697680..40700101-chr15:40729674..40731814,2	MCF-7	breast:
2	chr15:40727012..40730697-chr15:40730781..40733287,4	MCF-7	breast:
3	chr15:40729975..40738939-chr15:40745780..40750666,13	K562	blood:
4	chr15:40675969..40678151-chr15:40728400..40731089,2	K562	blood:
5	chr15:40618049..40622052-chr15:40729021..40731269,3	K562	blood:
6	chr15:40729710..40731654-chr15:40849849..40851885,2	MCF-7	breast:
7	chr15:40619456..40622052-chr15:40729021..40731269,2	K562	blood:
8	chr15:40730539..40734458-chr15:40797952..40800684,3	K562	blood:

No data

Variant related genes	Relation type
BAHD1	TF binding region
ENSG00000140320	Chromatin interaction
ENSG00000128928	Chromatin interaction
ENSG00000259364	Chromatin interaction
ENSG00000259536	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11634187	1.00[ASN][1000 genomes]
rs11636147	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs35189772	DISP2	cis	Adipose Subcutaneous	GTEx
rs35189772	DISP2	cis	Nerve Tibial	GTEx
rs35189772	RP11-64K12.4	cis	Esophagus Muscularis	GTEx
rs35189772	DISP2	cis	Heart Left Ventricle	GTEx
rs35189772	DISP2	cis	Esophagus Mucosa	GTEx
rs35189772	RP11-64K12.4	cis	Skin Sun Exposed Lower leg	GTEx
rs35189772	DISP2	cis	Muscle Skeletal	GTEx
rs35189772	RP11-64K12.4	cis	Adipose Subcutaneous	GTEx
rs35189772	DISP2	cis	Skin Sun Exposed Lower leg	GTEx
rs35189772	DISP2	cis	Esophagus Muscularis	GTEx
rs35189772	DISP2	cis	lung	GTEx

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40728200-40731000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:40728400-40732000	Flanking Active TSS	K562	blood
3	chr15:40728800-40731400	Enhancers	Gastric	stomach
4	chr15:40729200-40730800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:40729200-40731400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:40729200-40731800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:40729200-40731800	Bivalent Enhancer	Placenta	Placenta
8	chr15:40729200-40731800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr15:40729200-40732200	Bivalent Enhancer	Fetal Lung	lung
10	chr15:40729400-40731000	Bivalent Enhancer	HepG2	liver
11	chr15:40729400-40731800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr15:40729400-40731800	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr15:40729400-40732000	Enhancers	Fetal Heart	heart
14	chr15:40729400-40732000	Weak transcription	Right Atrium	heart
15	chr15:40729600-40731000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr15:40729600-40731400	Enhancers	Brain Angular Gyrus	brain
17	chr15:40729600-40731600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:40729600-40731600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr15:40729600-40731800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:40729600-40732000	Weak transcription	Lung	lung
21	chr15:40729800-40730800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:40729800-40731800	Weak transcription	Brain Substantia Nigra	brain
23	chr15:40729800-40732000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:40730000-40730800	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:40730000-40730800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:40730000-40730800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:40730000-40731400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:40730000-40732000	Enhancers	Colonic Mucosa	Colon
29	chr15:40730200-40730800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
30	chr15:40730200-40731400	Weak transcription	Brain Anterior Caudate	brain
31	chr15:40730200-40731400	Weak transcription	A549	lung
32	chr15:40730400-40730800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:40730400-40730800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
34	chr15:40730400-40731000	Enhancers	H9 Cell Line	embryonic stem cell
35	chr15:40730400-40731400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:40730400-40731800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr15:40730400-40731800	Weak transcription	Spleen	Spleen
38	chr15:40730600-40730800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
39	chr15:40730600-40730800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
40	chr15:40730600-40730800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
41	chr15:40730600-40730800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
42	chr15:40730600-40731000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:40730600-40731000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
44	chr15:40730600-40731400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:40730600-40731600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr15:40730600-40731600	Weak transcription	Esophagus	oesophagus
47	chr15:40730600-40731600	Enhancers	Pancreas	Pancrea
48	chr15:40730600-40731800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr15:40730600-40731800	Enhancers	Ovary	ovary
50	chr15:40730600-40732000	Enhancers	Right Ventricle	heart

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