Variant report

Variant	rs35191119
Chromosome Location	chr9:116916044-116916045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:116915956-116916342	HepG2	liver:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
2	HEY1	chr9:116915966-116916782	HepG2	liver:	n/a	chr9:116916468-116916483 chr9:116916552-116916567
3	EGR1	chr9:116915943-116916238	K562	blood:	n/a	chr9:116916070-116916083 chr9:116916078-116916088 chr9:116916070-116916083 chr9:116916072-116916082 chr9:116916069-116916084 chr9:116916073-116916082 chr9:116916078-116916093 chr9:116916070-116916083 chr9:116916082-116916091 chr9:116916070-116916083
4	MAX	chr9:116915954-116916467	H1-hESC	embryonic stem cell:	n/a	n/a
5	TCF7L2	chr9:116915999-116917215	HCT-116	colon:	n/a	chr9:116916342-116916356
6	MAX	chr9:116916027-116916463	HepG2	liver:	n/a	n/a
7	CTBP2	chr9:116915982-116917075	H1-hESC	embryonic stem cell:	n/a	n/a
8	MYBL2	chr9:116915894-116917041	HepG2	liver:	n/a	n/a
9	MAX	chr9:116915821-116917349	A549	lung:	n/a	n/a
10	RAD21	chr9:116916029-116916340	H1-hESC	embryonic stem cell:	n/a	chr9:116916330-116916340 chr9:116916162-116916181 chr9:116916164-116916176 chr9:116916166-116916176
11	CTCF	chr9:116915987-116916456	HepG2	liver:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
12	NFIC	chr9:116916040-116916440	HepG2	liver:	n/a	n/a
13	RAD21	chr9:116915923-116916435	H1-hESC	embryonic stem cell:	n/a	chr9:116916389-116916399 chr9:116916330-116916340 chr9:116916162-116916181 chr9:116916164-116916176 chr9:116916166-116916176
14	MYC	chr9:116915974-116916612	HepG2	liver:	n/a	n/a
15	CTCF	chr9:116915991-116916381	H1-hESC	embryonic stem cell:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
16	CTCF	chr9:116916016-116916397	IMR90	lung:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
17	CTCF	chr9:116916030-116916312	SK-N-SH_RA	brain:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
18	CTCF	chr9:116915996-116916328	T-47D	breast:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
19	EGR1	chr9:116915892-116916297	ECC-1	luminal epithelium:	n/a	chr9:116916070-116916083 chr9:116916078-116916088 chr9:116916070-116916083 chr9:116916072-116916082 chr9:116916069-116916084 chr9:116916073-116916082 chr9:116916078-116916093 chr9:116916070-116916083 chr9:116916082-116916091 chr9:116916070-116916083
20	TAF1	chr9:116916016-116916592	HepG2	liver:	n/a	n/a
21	MAZ	chr9:116915766-116920871	IMR90	lung:	n/a	chr9:116917994-116918004 chr9:116918626-116918636 chr9:116920321-116920330 chr9:116919415-116919424 chr9:116917529-116917539
22	CTCF	chr9:116916018-116916283	A549	lung:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
23	EGR1	chr9:116915946-116916328	H1-hESC	embryonic stem cell:	n/a	chr9:116916070-116916083 chr9:116916078-116916088 chr9:116916070-116916083 chr9:116916072-116916082 chr9:116916069-116916084 chr9:116916073-116916082 chr9:116916078-116916093 chr9:116916070-116916083 chr9:116916082-116916091 chr9:116916070-116916083
24	POLR2A	chr9:116915999-116917156	HepG2	liver:	n/a	n/a
25	CTCF	chr9:116916020-116916170	HFF-Myc	foreskin:	n/a	n/a
26	MBD4	chr9:116916030-116916432	HepG2	liver:	n/a	n/a
27	EP300	chr9:116915927-116916648	HepG2	liver:	n/a	chr9:116916563-116916579 chr9:116916396-116916412
28	ELF1	chr9:116916018-116916376	HepG2	liver:	n/a	n/a
29	SIN3A	chr9:116916033-116916651	H1-hESC	embryonic stem cell:	n/a	chr9:116916101-116916112 chr9:116916099-116916112
30	CTCF	chr9:116916035-116916273	A549	lung:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
31	MAX	chr9:116915965-116916492	H1-hESC	embryonic stem cell:	n/a	n/a
32	MAX	chr9:116915851-116918035	HepG2	liver:	n/a	chr9:116917994-116918004 chr9:116917529-116917539
33	FOSL2	chr9:116915991-116916469	HepG2	liver:	n/a	n/a
34	TEAD4	chr9:116915907-116916494	HepG2	liver:	n/a	n/a
35	RAD21	chr9:116915926-116916545	HepG2	liver:	n/a	chr9:116916389-116916399 chr9:116916330-116916340 chr9:116916162-116916181 chr9:116916164-116916176 chr9:116916166-116916176
36	CTCF	chr9:116916040-116916190	NHEK	skin:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
37	POLR2A	chr9:116915906-116917602	HepG2	liver:	n/a	n/a
38	CTCF	chr9:116915770-116916642	A549	lung:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
39	RAD21	chr9:116915937-116916465	HepG2	liver:	n/a	chr9:116916389-116916399 chr9:116916330-116916340 chr9:116916162-116916181 chr9:116916164-116916176 chr9:116916166-116916176
40	CTCF	chr9:116916040-116916190	HMEC	breast:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
41	CTCF	chr9:116916000-116916150	HAc	cerebellar:	n/a	n/a
42	CTCF	chr9:116915884-116916429	MCF-7	breast:	n/a	chr9:116916166-116916179 chr9:116916164-116916182
43	RAD21	chr9:116915874-116916344	A549	lung:	n/a	chr9:116916330-116916340 chr9:116916162-116916181 chr9:116916164-116916176 chr9:116916166-116916176
44	YY1	chr9:116915812-116916459	H1-hESC	embryonic stem cell:	n/a	chr9:116916328-116916337
45	RAD21	chr9:116916033-116916373	SK-N-SH_RA	brain:	n/a	chr9:116916330-116916340 chr9:116916162-116916181 chr9:116916164-116916176 chr9:116916166-116916176
46	HDAC2	chr9:116915801-116916914	HepG2	liver:	n/a	n/a
47	SMC3	chr9:116915962-116916358	HepG2	liver:	n/a	chr9:116916166-116916180 chr9:116916330-116916340
48	TEAD4	chr9:116915969-116916378	H1-hESC	embryonic stem cell:	n/a	n/a
49	TEAD4	chr9:116915999-116916408	H1-hESC	embryonic stem cell:	n/a	n/a
50	TBP	chr9:116916043-116916848	HepG2	liver:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:116916031-116916081	HRPEpiC	eye:	n/a
2	chr9:116916031-116916081	GM12878	blood:	n/a
3	chr9:116916031-116916081	GM12892	blood:	n/a
4	chr9:116916031-116916081	T-47D	breast:	n/a
5	chr9:116916031-116916081	NHBE	bronchial:	n/a
6	chr9:116916031-116916081	AG10803	skin:	n/a
7	chr9:116916031-116916081	ProgFib	skin:	n/a
8	chr9:116916031-116916081	NT2-D1	testis:	n/a
9	chr9:116916031-116916081	GM12891	blood:	n/a
10	chr9:116916031-116916081	HCT-116	colon:	n/a
11	chr9:116916031-116916081	U87	brain:	n/a
12	chr9:116916031-116916081	NH-A	brain:	n/a
13	chr9:116916031-116916081	Jurkat	blood:	n/a
14	chr9:116916031-116916081	AG09319	gingival:	n/a
15	chr9:116916031-116916081	HIPEpiC	eye:	n/a
16	chr9:116916031-116916081	HMEC	breast:	n/a
17	chr9:116916031-116916081	GM19239	blood:	n/a
18	chr9:116916031-116916081	AG04449	skin:	fetal
19	chr9:116916031-116916081	RPTEC	kidney:	n/a
20	chr9:116916031-116916081	HCM	heart:	n/a
21	chr9:116916031-116916081	PANC-1	pancreas:	n/a
22	chr9:116916031-116916081	NB4	blood:	n/a
23	chr9:116916031-116916081	SK-N-MC	brain:	n/a
24	chr9:116916031-116916081	SAEC	small airway:	n/a
25	chr9:116916031-116916081	ovcar-3	ovarian:	n/a
26	chr9:116916031-116916081	PrEC	prostate:	n/a
27	chr9:116916031-116916081	SK-N-SH_RA	brain:	n/a
28	chr9:116916031-116916081	HCF	heart:	n/a
29	chr9:116916031-116916081	BE2_C	brain:	n/a
30	chr9:116916031-116916081	HEEpiC	esophagus:	n/a
31	chr9:116916031-116916081	HL-60	blood:	n/a
32	chr9:116916031-116916081	GM06990	blood:	n/a
33	chr9:116916031-116916081	H1-hESC	embryonic stem cell:	embryo
34	chr9:116916031-116916081	K562	blood:	n/a
35	chr9:116916031-116916081	SK-N-SH	brain:	n/a
36	chr9:116916031-116916081	ECC-1	luminal epithelium:	n/a
37	chr9:116916031-116916081	MCF-7	breast:	n/a
38	chr9:116916031-116916081	HUVEC	blood vessel:	n/a
39	chr9:116916031-116916081	HepG2	liver:	n/a
40	chr9:116916031-116916081	HRE	kidney:	n/a
41	chr9:116916031-116916081	Hepatocyte	liver:	n/a
42	chr9:116916031-116916081	HAEpiC	amniotic membrane:	n/a
43	chr9:116916031-116916081	HRCEpiC	kidney:	n/a
44	chr9:116916031-116916081	AG04450	lung:	fetal
45	chr9:116916031-116916081	BJ	skin:	n/a
46	chr9:116916031-116916081	CMK	blood:	n/a
47	chr9:116916031-116916081	IMR90	lung:	fetal
48	chr9:116916031-116916081	HEK293	kidney:	embryo
49	chr9:116916031-116916081	Hela-S3	cervix:	n/a
50	chr9:116916031-116916081	HNPCEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:116869949..116870838-chr9:116915614..116916621,9	MCF-7	breast:
2	chr9:116914824..116917398-chr9:116971543..116973662,2	MCF-7	breast:
3	chr9:116909854..116913482-chr9:116913961..116916713,3	MCF-7	breast:
4	chr9:116869891..116870803-chr9:116915238..116916605,3	MCF-7	breast:

Variant related genes	Relation type
COL27A1	TF binding region
COL27A1	CpG island
ENSG00000207726	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34091560	0.87[EUR][1000 genomes]
rs41278647	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv2422396	chr9:116792944-117354862	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
3	esv2422492	chr9:116811294-117366643	Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
4	esv2761285	chr9:116811897-117103268	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
5	nsv870215	chr9:116842614-117070344	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	124 gene(s)	inside rSNPs	diseases
6	nsv893752	chr9:116899258-116944333	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv466526	chr9:116901926-116924781	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv615226	chr9:116901926-116924781	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv615227	chr9:116904534-116924781	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv466527	chr9:116907448-116933449	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv615228	chr9:116907448-116933449	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv466529	chr9:116907553-116930194	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv615229	chr9:116907553-116930194	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116914000-116916600	Enhancers	Liver	Liver
2	chr9:116915200-116916200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
3	chr9:116915400-116916600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr9:116915800-116916200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
5	chr9:116915800-116916200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:116915800-116916200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
7	chr9:116915800-116916200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:116915800-116916200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr9:116915800-116916200	Bivalent Enhancer	HSMMtube	muscle
10	chr9:116915800-116916600	Bivalent Enhancer	Fetal Lung	lung
11	chr9:116915800-116916800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:116915800-116916800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr9:116915800-116916800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr9:116915800-116916800	Enhancers	Fetal Heart	heart
15	chr9:116915800-116916800	Active TSS	Stomach Mucosa	stomach
16	chr9:116915800-116917400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
17	chr9:116915800-116917600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
18	chr9:116916000-116916200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:116916000-116916200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:116916000-116916200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:116916000-116916200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:116916000-116916200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:116916000-116916200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
24	chr9:116916000-116916200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
25	chr9:116916000-116916200	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr9:116916000-116916200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:116916000-116916200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:116916000-116916200	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:116916000-116916200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
30	chr9:116916000-116916200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
31	chr9:116916000-116916200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr9:116916000-116916200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr9:116916000-116916200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:116916000-116916200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
35	chr9:116916000-116916200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:116916000-116916200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:116916000-116916200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
38	chr9:116916000-116916200	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:116916000-116916200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
40	chr9:116916000-116916200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
41	chr9:116916000-116916200	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
42	chr9:116916000-116916200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
43	chr9:116916000-116916200	Enhancers	Left Ventricle	heart
44	chr9:116916000-116916200	Flanking Active TSS	Pancreas	Pancrea
45	chr9:116916000-116916200	Flanking Active TSS	Right Ventricle	heart
46	chr9:116916000-116916200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
47	chr9:116916000-116916200	Flanking Active TSS	A549	lung
48	chr9:116916000-116916200	Bivalent Enhancer	HMEC	breast
49	chr9:116916000-116916200	Flanking Bivalent TSS/Enh	HSMM	muscle
50	chr9:116916000-116916200	Bivalent Enhancer	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links