Variant report

Variant	rs35197424
Chromosome Location	chr10:28668350-28668351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34645766	1.00[AFR][1000 genomes]
rs61849570	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28664800-28670600	Weak transcription	HSMM	muscle
2	chr10:28665200-28675600	Weak transcription	Hela-S3	cervix
3	chr10:28667200-28671200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:28667600-28668400	Enhancers	Esophagus	oesophagus
5	chr10:28667600-28669200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:28667600-28669400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:28667600-28671600	Enhancers	HepG2	liver
8	chr10:28667800-28668400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr10:28667800-28669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:28667800-28671200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:28668200-28668400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:28668200-28668400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:28668200-28669200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:28668200-28669200	Weak transcription	Placenta	Placenta
15	chr10:28668200-28670600	Weak transcription	Stomach Mucosa	stomach
16	chr10:28668200-28671200	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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