Variant report

Variant	rs35200589
Chromosome Location	chr15:42398601-42398602
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42398541..42400541-chr15:42411116..42413868,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12148416	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17691880	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17748059	0.86[EUR][1000 genomes]
rs17748132	0.86[EUR][1000 genomes]
rs17748317	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4923926	0.84[EUR][1000 genomes]
rs4923927	0.84[EUR][1000 genomes]
rs4923928	0.86[EUR][1000 genomes]
rs4924619	0.86[EUR][1000 genomes]
rs4924620	0.86[EUR][1000 genomes]
rs7162019	0.86[EUR][1000 genomes]
rs7165458	0.86[EUR][1000 genomes]
rs7165460	0.86[EUR][1000 genomes]
rs7166093	0.81[EUR][1000 genomes]
rs7166789	0.86[EUR][1000 genomes]
rs7176443	0.86[EUR][1000 genomes]
rs7176459	0.86[EUR][1000 genomes]
rs8029713	0.86[EUR][1000 genomes]
rs8042953	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv471683	chr15:42334375-42502982	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv457121	chr15:42396282-42418085	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv569236	chr15:42396282-42418085	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42393000-42399600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:42393000-42399600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:42393000-42399800	Weak transcription	Right Atrium	heart
4	chr15:42393200-42399000	Weak transcription	Esophagus	oesophagus
5	chr15:42393200-42399000	Weak transcription	Gastric	stomach
6	chr15:42394600-42400200	Enhancers	Fetal Thymus	thymus
7	chr15:42395200-42399600	Weak transcription	HMEC	breast
8	chr15:42395200-42404000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:42395400-42399600	Weak transcription	HSMM	muscle
10	chr15:42395400-42399600	Weak transcription	NHEK	skin
11	chr15:42395400-42400600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:42396200-42398800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr15:42396200-42404200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr15:42396200-42405200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr15:42396800-42399200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr15:42397400-42400200	Enhancers	Brain Germinal Matrix	brain
17	chr15:42397600-42399600	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr15:42397600-42400000	Enhancers	Fetal Muscle Trunk	muscle
19	chr15:42397600-42400000	Enhancers	GM12878-XiMat	blood
20	chr15:42397600-42400200	Enhancers	Fetal Muscle Leg	muscle
21	chr15:42397800-42399800	Weak transcription	Fetal Intestine Small	intestine
22	chr15:42397800-42402200	Weak transcription	Dnd41	blood
23	chr15:42398000-42399600	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr15:42398000-42400800	Bivalent Enhancer	HepG2	liver
25	chr15:42398200-42398800	Weak transcription	Lung	lung
26	chr15:42398200-42400000	Enhancers	Stomach Mucosa	stomach
27	chr15:42398400-42399600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:42398400-42399600	Weak transcription	Brain Angular Gyrus	brain
29	chr15:42398600-42399600	Enhancers	Brain Cingulate Gyrus	brain
30	chr15:42398600-42399600	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:42398600-42399600	Weak transcription	Brain Inferior Temporal Lobe	brain

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