Variant report

Variant	rs35202642
Chromosome Location	chr8:117950059-117950060
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:117949985-117951195	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr8:117949982-117951070	U87	brain:	n/a	n/a
3	YY1	chr8:117949948-117951111	H1-hESC	embryonic stem cell:	n/a	chr8:117951002-117951013 chr8:117950395-117950404 chr8:117951001-117951010
4	HA-E2F1	chr8:117949690-117951208	MCF-7	breast:	n/a	chr8:117951001-117951010
5	ZNF263	chr8:117949825-117951164	HEK293-T-REx	kidney:	n/a	chr8:117950282-117950291 chr8:117951043-117951052
6	POLR2A	chr8:117950007-117950966	PFSK-1	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAD21-1	chr8:117947899-117950697	NONHSAT128383

Variant related genes	Relation type
AARD	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv891409	chr8:117948986-117972064	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117948000-117950600	Weak transcription	NHEK	skin
2	chr8:117949600-117950200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:117949600-117951000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
4	chr8:117949600-117951200	Active TSS	Colon Smooth Muscle	Colon
5	chr8:117949800-117950200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr8:117949800-117950200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr8:117949800-117950200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr8:117949800-117950200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:117949800-117950200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr8:117949800-117950200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
11	chr8:117949800-117950200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:117949800-117950600	Bivalent/Poised TSS	Fetal Lung	lung
13	chr8:117949800-117950800	Enhancers	Gastric	stomach
14	chr8:117949800-117951200	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr8:117949800-117951200	Active TSS	Rectal Smooth Muscle	rectum
16	chr8:117949800-117951400	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr8:117949800-117951400	Active TSS	H1 Cell Line	embryonic stem cell
18	chr8:117949800-117951400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:117949800-117951400	Active TSS	Stomach Smooth Muscle	stomach
20	chr8:117950000-117950200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
21	chr8:117950000-117950200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
22	chr8:117950000-117950200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
23	chr8:117950000-117950200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:117950000-117950200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr8:117950000-117950200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr8:117950000-117950200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
27	chr8:117950000-117950200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr8:117950000-117950200	Bivalent Enhancer	Stomach Mucosa	stomach
29	chr8:117950000-117950400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:117950000-117950400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:117950000-117950400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:117950000-117950400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr8:117950000-117950400	Active TSS	Fetal Muscle Trunk	muscle
34	chr8:117950000-117950400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
35	chr8:117950000-117950400	Enhancers	Pancreas	Pancrea
36	chr8:117950000-117950600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr8:117950000-117950800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:117950000-117951000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:117950000-117951000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
40	chr8:117950000-117951000	Active TSS	Muscle Satellite Cultured Cells	--
41	chr8:117950000-117951200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
42	chr8:117950000-117951200	Active TSS	H9 Cell Line	embryonic stem cell
43	chr8:117950000-117951200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:117950000-117951200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr8:117950000-117951200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr8:117950000-117951200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr8:117950000-117951200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
48	chr8:117950000-117951200	Active TSS	Fetal Kidney	kidney
49	chr8:117950000-117951200	Active TSS	HMEC	breast
50	chr8:117950000-117951200	Active TSS	NH-A	brain

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