Variant report

Variant	rs35208294
Chromosome Location	chr15:59881954-59881955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10163153	0.88[ASN][1000 genomes]
rs11853187	0.82[EUR][1000 genomes]
rs11856306	0.82[EUR][1000 genomes]
rs12440292	0.88[ASN][1000 genomes]
rs1479883	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1479884	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1552033	0.84[ASN][1000 genomes]
rs1552034	0.84[ASN][1000 genomes]
rs1600406	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28634844	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34444281	0.93[ASN][1000 genomes]
rs34526393	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35046363	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775180	0.84[EUR][1000 genomes]
rs67189240	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7169937	0.84[ASN][1000 genomes]
rs7171752	0.83[ASN][1000 genomes]
rs7342617	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv569605	chr15:59855226-59956553	Strong transcription Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59879800-59882400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:59880000-59883200	Weak transcription	NHEK	skin
3	chr15:59880000-59883400	Weak transcription	A549	lung
4	chr15:59880000-59883600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:59880000-59883600	Weak transcription	HMEC	breast
6	chr15:59880000-59883800	Weak transcription	HepG2	liver
7	chr15:59880000-59884000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:59880400-59883200	Weak transcription	Fetal Intestine Small	intestine
9	chr15:59880400-59883200	Weak transcription	Stomach Mucosa	stomach
10	chr15:59881200-59882400	Enhancers	Small Intestine	intestine
11	chr15:59881400-59882400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:59881600-59883200	Weak transcription	Fetal Intestine Large	intestine
13	chr15:59881800-59882200	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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