Variant report

Variant	rs35211335
Chromosome Location	chr16:81896291-81896292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81890465..81892358-chr16:81894791..81897464,3	MCF-7	breast:
2	chr16:81884180..81885826-chr16:81895799..81898361,2	K562	blood:
3	chr16:81885841..81888862-chr16:81895847..81897898,3	K562	blood:

Variant related genes	Relation type
ENSG00000197943	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12102535	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12596760	1.00[ASN][1000 genomes]
rs12932761	1.00[ASN][1000 genomes]
rs34028338	1.00[ASN][1000 genomes]
rs34314759	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35454747	1.00[ASN][1000 genomes]
rs36114479	1.00[ASN][1000 genomes]
rs3935877	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4888184	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71400181	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342692	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1065088	chr16:81878481-81953248	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81866800-81898600	Weak transcription	Right Atrium	heart
2	chr16:81871200-81897200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:81876200-81918200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr16:81880000-81911200	Weak transcription	Pancreas	Pancrea
5	chr16:81880400-81908200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr16:81882800-81897200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr16:81884400-81897200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr16:81886400-81896400	Strong transcription	Primary B cells from cord blood	blood
9	chr16:81887600-81897000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr16:81887600-81901800	Weak transcription	Fetal Kidney	kidney
11	chr16:81887800-81897400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr16:81887800-81899000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr16:81888000-81896800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr16:81888200-81897600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr16:81889400-81896400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr16:81892000-81900600	Weak transcription	Thymus	Thymus
17	chr16:81894000-81897000	Strong transcription	Primary hematopoietic stem cells	blood
18	chr16:81894400-81900400	Weak transcription	Liver	Liver
19	chr16:81894800-81897200	Genic enhancers	GM12878-XiMat	blood
20	chr16:81894800-81912400	Weak transcription	Fetal Intestine Small	intestine
21	chr16:81895200-81896400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr16:81895200-81897200	Enhancers	Adipose Nuclei	Adipose
23	chr16:81895400-81896400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr16:81895800-81896400	Enhancers	HUVEC	blood vessel
25	chr16:81895800-81897000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr16:81895800-81897200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr16:81895800-81902600	Genic enhancers	Primary B cells from peripheral blood	blood
28	chr16:81896000-81896400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
29	chr16:81896000-81896400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr16:81896000-81897000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr16:81896000-81897200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr16:81896000-81897200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr16:81896000-81897200	Weak transcription	Spleen	Spleen
34	chr16:81896000-81898200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr16:81896000-81900800	Weak transcription	Esophagus	oesophagus
36	chr16:81896200-81896400	Enhancers	Lung	lung
37	chr16:81896200-81897600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr16:81896200-81898000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr16:81896200-81898000	Weak transcription	HMEC	breast
40	chr16:81896200-81900000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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