Variant report

Variant	rs35226963
Chromosome Location	chr7:84010072-84010073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12669232	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12671342	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12673557	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12707648	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13223611	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13227076	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13231225	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13235879	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13240778	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13243946	0.82[EUR][1000 genomes]
rs2158170	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34066589	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34465986	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34483851	0.80[EUR][1000 genomes]
rs34581735	0.82[EUR][1000 genomes]
rs34814672	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34822336	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35428742	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35651748	0.83[EUR][1000 genomes]
rs35949214	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55737059	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55920699	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62471988	0.83[EUR][1000 genomes]
rs6947640	0.81[EUR][1000 genomes]
rs6948391	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6948764	0.83[EUR][1000 genomes]
rs6960804	0.83[EUR][1000 genomes]
rs6961917	0.82[EUR][1000 genomes]
rs71558727	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7810450	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1023848	chr7:83985028-84101774	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761342	chr7:83985028-84101798	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv534431	chr7:84001059-84138511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv519466	chr7:84010005-84010960	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84003400-84013800	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links