Variant report

Variant	rs35230355
Chromosome Location	chr1:180747829-180747830
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:180739733..180743864-chr1:180743918..180747985,4	K562	blood:
2	chr1:180484690..180485597-chr1:180747775..180748476,3	MCF-7	breast:
3	chr1:180747682..180748432-chr6:34122218..34123052,2	MCF-7	breast:
4	chr1:180747676..180748345-chr1:180832454..180832976,2	K562	blood:
5	chr1:180745041..180748081-chr1:180751703..180755514,3	MCF-7	breast:
6	chr1:180747652..180748487-chr1:180851159..180851718,2	MCF-7	breast:
7	chr1:180747556..180748298-chr1:181135354..181136258,3	MCF-7	breast:
8	chr1:180605186..180605917-chr1:180747764..180748768,4	MCF-7	breast:
9	chr1:180461405..180464070-chr1:180746505..180748315,2	K562	blood:
10	chr1:180747802..180748637-chr1:180831455..180833255,10	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv3777	chr1:180741213-180780313	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv548346	chr1:180747033-180755321	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180713000-180814200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:180722600-180751000	Weak transcription	Left Ventricle	heart
3	chr1:180738000-180751200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:180740200-180751000	Weak transcription	Fetal Brain Female	brain
5	chr1:180740200-180753000	Weak transcription	Small Intestine	intestine
6	chr1:180740200-180761000	Weak transcription	Psoas Muscle	Psoas
7	chr1:180740800-180775600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:180741000-180757200	Weak transcription	Primary B cells from cord blood	blood
9	chr1:180741600-180784000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:180743400-180757200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:180743400-180763000	Weak transcription	HSMM	muscle
12	chr1:180744000-180757200	Weak transcription	Primary T cells from cord blood	blood
13	chr1:180744400-180751000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:180746600-180748400	Enhancers	Liver	Liver
15	chr1:180746600-180751400	Weak transcription	Fetal Brain Male	brain
16	chr1:180747000-180756800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr1:180747600-180748200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:180747800-180761000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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