Variant report

Variant	rs35236487
Chromosome Location	chr1:10927117-10927118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:10568670..10571119-chr1:10926842..10928478,2	K562	blood:
2	chr1:10576160..10578872-chr1:10926632..10929593,2	MCF-7	breast:
3	chr1:10567095..10568153-chr1:10926865..10927880,8	K562	blood:
4	chr1:10489961..10490892-chr1:10926816..10927795,3	K562	blood:
5	chr1:10751694..10755124-chr1:10925813..10928871,3	MCF-7	breast:
6	chr1:10925966..10930455-chr1:10932404..10937595,5	K562	blood:
7	chr1:10562142..10564951-chr1:10926770..10929049,2	K562	blood:
8	chr1:10752227..10753991-chr1:10926922..10928500,5	MCF-7	breast:
9	chr1:10919663..10923359-chr1:10925488..10928766,3	MCF-7	breast:
10	chr1:10554756..10555464-chr1:10926875..10927459,2	K562	blood:
11	chr1:10754807..10756455-chr1:10925799..10928452,2	MCF-7	breast:
12	chr1:10926964..10929247-chr1:10959901..10962873,4	MCF-7	breast:
13	chr1:10895615..10898736-chr1:10923813..10928307,5	K562	blood:
14	chr1:10574408..10575004-chr1:10926842..10927727,2	K562	blood:
15	chr1:10926420..10929831-chr1:10932404..10934606,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000251503	Chromatin interaction
ENSG00000271989	Chromatin interaction
ENSG00000175279	Chromatin interaction
ENSG00000130940	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12028719	0.86[EUR][1000 genomes]
rs12030479	0.83[EUR][1000 genomes]
rs12048262	0.88[EUR][1000 genomes]
rs12048967	0.88[EUR][1000 genomes]
rs12724989	0.88[EUR][1000 genomes]
rs34542452	0.86[EUR][1000 genomes]
rs34896200	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36047809	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72470188	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv871617	chr1:10858746-10935232	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv871155	chr1:10858746-10998509	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv1825837	chr1:10887923-11093741	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv832425	chr1:10903845-11122975	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv545406	chr1:10915507-10935232	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv3372885	chr1:10925565-10927613	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv3355758	chr1:10925990-10928738	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10925800-10928000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
2	chr1:10926000-10927800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr1:10926000-10927800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr1:10926000-10927800	Enhancers	Fetal Heart	heart
5	chr1:10926000-10928600	Bivalent Enhancer	Fetal Brain Male	brain
6	chr1:10926200-10927600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr1:10926200-10927600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr1:10926200-10927800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr1:10926400-10927800	Enhancers	Lung	lung
10	chr1:10926400-10928000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
11	chr1:10926400-10928000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:10926400-10928400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:10926600-10927200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
14	chr1:10926600-10927200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:10926600-10927200	Bivalent Enhancer	Small Intestine	intestine
16	chr1:10926600-10927200	Bivalent Enhancer	Spleen	Spleen
17	chr1:10926600-10927400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:10926600-10927400	Bivalent Enhancer	Adipose Nuclei	Adipose
19	chr1:10926600-10927400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
20	chr1:10926600-10927400	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr1:10926600-10927400	Bivalent/Poised TSS	Osteobl	bone
22	chr1:10926600-10927600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:10926600-10927600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
24	chr1:10926600-10927600	Enhancers	Pancreas	Pancrea
25	chr1:10926600-10927800	Bivalent Enhancer	Primary B cells from cord blood	blood
26	chr1:10926600-10927800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
27	chr1:10926600-10927800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr1:10926600-10928000	Bivalent Enhancer	Fetal Thymus	thymus
29	chr1:10926600-10928400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:10926800-10927200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:10926800-10927200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
32	chr1:10926800-10927200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
33	chr1:10926800-10927200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
34	chr1:10926800-10927200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
35	chr1:10926800-10927200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
36	chr1:10926800-10927200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
37	chr1:10926800-10927200	Flanking Bivalent TSS/Enh	Dnd41	blood
38	chr1:10926800-10927400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr1:10926800-10927400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:10926800-10927400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr1:10926800-10927400	Active TSS	Brain Angular Gyrus	brain
42	chr1:10926800-10927400	Active TSS	Brain Anterior Caudate	brain
43	chr1:10926800-10927400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
44	chr1:10926800-10927400	Active TSS	Colon Smooth Muscle	Colon
45	chr1:10926800-10927400	Bivalent/Poised TSS	Fetal Brain Female	brain
46	chr1:10926800-10927400	Active TSS	Right Atrium	heart
47	chr1:10926800-10927400	Active TSS	Right Ventricle	heart
48	chr1:10926800-10927400	Bivalent/Poised TSS	Thymus	Thymus
49	chr1:10926800-10927400	Enhancers	K562	blood
50	chr1:10926800-10927600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links